G27278


Basic Information

Item Value
gene id G27278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49803283 ~ 49804689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36651
taagtctAGATTTTCAGGGGATGaactttaaatgaattaaataaataaaaaaactcttgcACCAACAACTGAATTGACTTAATGGAAGTCATGAGGGCAAAATCTACCTTTTGTGTGGCATCACTTTTAAAATGCCATTATCTAATCTTGTAAAAACTCTGACCccagtatatgtatgtgtgtgtgtgtgtgtgtgtgtatgcatgagTGTTTGTTTGCACTGCACTCTTGGATCAGATGATACCCCCAGTTAGAGGCCTATCTCCGATCTCTCCATTGCGCTAGCCTCAGCACTGGGTCTGCGCCAGCCCTTTGAATTGAATGTGAGCAGAAAGACTCGTAGGTCAGcacaaaactgtacaaaaaaaaaaaaaaaagaaagtcagcagcagcagcagcctgtcacgcTCAACGCGCTCCGATCTCTCTCAGCGGGGCCCCCTCCGGGCCCTCGTCGGCTCTTACCTTGTCCTATGGATCCCGGGGCCCCTGTAGAGACAGCCGTTTTAAGCCAATTTGAGATTAATGCCTGGGTTCAATCGATCTTCAATTGAGGCCACTGCAAAGGTTCAATGACAGATGTGTCATAGTGTCttttctttccctccttttttATTCCGAAGACGTTTTCGGCTTGGaggaaggacaaaaaaaaatacaaaatggcCCGTATTGTGAACTCGCTTGAATCCAGGCCGGTGTGATGTTTTAAAGACTTGACGTAATGAGAAAGATGAAGTAACATGGATGCCCCCCTTTGAGAAAACTAAACACGGAAAAGAAATCTGGACGATTCCAAAGACGTCAGCACTGTTGATTGTGTCCGAGAGATCATAAACGGTTCGAGGGAAACTTTGTATATGATCTAATTGTAAAacttgtacattttatttatattgttgtttctttttttacacttatttcCTCTGTAGTGAGCTCTGAATTCATTGAAAATGCACTATATTTTTCTATCTCACTCGCAAAAACGCTTAGTCACCCGGACTATTTCAGTTGTACATAATTTCTCATTTAGGACCAAAGACAGCTGATAGGCTTccattttagagtttttttgtttgtttcgtttgttttgtttttagttttattatttttgcctCTTAggtttaaatgtacagtaaaataaatggtcgatttattatttatttttctgtgacgATAGTATGGAGAGTATTCATTGGTCAAAAAGTATTTTCCCCAGCTGCAGAACTGTAAAATCATTGACTAGACctatttctttcttctttttttttttgctttatttgcttTGTAATCTTTTGACCTTTGTAATAGactgtacatatatttttggAAATATAATACAATCTCTAtagaaatgtgtttgtgtggtatttttttgtcattctcAGATATTAGGACATCTAGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36651 True 1407 lncRNA 0.38 1 49803283 49804689

Neighbor

gene id symbol gene type direction distance location
LOC111191920 NA coding downstream 367630 49434912 ~ 49435653 (-)
map3k7 map3k7 coding downstream 655800 49119962 ~ 49147483 (-)
bach2 bach2 coding downstream 727389 48909552 ~ 49075894 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding downstream 951638 48746900 ~ 48851645 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding downstream 1067913 48723000 ~ 48735370 (-)
epha7 epha7 coding upstream 3405 49808094 ~ 49941006 (-)
LOC103033334 NA coding upstream 769071 50573760 ~ 50580682 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding upstream 777658 50582347 ~ 50703118 (-)
ankrd6 ankrd6 coding upstream 974645 50779334 ~ 50855315 (-)
pm20d2 pm20d2 coding upstream 1344774 51149463 ~ 51174390 (-)
G27283 NA non-coding downstream 37342 49765702 ~ 49765941 (-)
G27262 NA non-coding downstream 45453 49757631 ~ 49757830 (-)
G27240 NA non-coding downstream 341367 49461497 ~ 49461916 (-)
G27237 NA non-coding downstream 369444 49432675 ~ 49433839 (-)
G27234 NA non-coding downstream 409463 49389851 ~ 49393820 (-)
G27279 NA non-coding upstream 275 49804964 ~ 49807298 (-)
G27301 NA non-coding upstream 316509 50121198 ~ 50122158 (-)
G27302 NA non-coding upstream 318850 50123539 ~ 50125491 (-)
G27303 NA non-coding upstream 319570 50124259 ~ 50125807 (-)
G27310 NA non-coding upstream 476777 50281466 ~ 50281690 (-)
G27258 NA other downstream 163839 49638759 ~ 49639444 (-)
G27145 NA other downstream 912255 48886994 ~ 48891028 (-)
LOC103039734 LOC108424428 other downstream 1478621 48217506 ~ 48324662 (-)
pln NA other downstream 1514547 48278262 ~ 48288736 (-)
G26754 NA other downstream 3064547 46704347 ~ 46738736 (-)
G27400 NA other upstream 677200 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 718210 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 920374 50725063 ~ 50740434 (-)
LOC103040973 NA other upstream 2489191 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 2981783 52786472 ~ 52849906 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G322421 NA non-coding NC_048568.1 CM023222.3 13570476 ~ 13572093 (-)
eurasian perch (Perca fluviatilis) G181811 NA non-coding NC_053129.1 CM020926.1 3004140 ~ 3005994 (-)