G27309



Basic Information


Item Value
gene id G27309
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50276299 ~ 50276507 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU36687
tgtggcgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgtcgtgatttgagcagccgtggttttatgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttgcatccacagttaatcctgttggatgtggttcatccttcttggtggtatgctgacattaccctggat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU36687 True 209 lncRNA 0.39 1 50276299 50276507

Neighbor


gene id symbol gene type direction distance location
LOC111191919 NA coding upstream 942377 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 1376065 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 1380320 48884002 ~ 48895979 (+)
ginm1 ginm1 coding upstream 1553389 48711573 ~ 48722910 (+)
LOC103042815 NA coding upstream 1568350 48699613 ~ 48707949 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding downstream 236446 50512953 ~ 50515944 (+)
lrp11 lrp11 coding downstream 429742 50706249 ~ 50723932 (+)
lats1 lats1,LOC107660506 coding downstream 481518 50758025 ~ 50768239 (+)
ube2j1 ube2j1 coding downstream 619854 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 704008 50980515 ~ 51030792 (+)
G27268 NA non-coding upstream 471793 49803428 ~ 49804506 (+)
G27264 NA non-coding upstream 512556 49763318 ~ 49763743 (+)
G27263 NA non-coding upstream 513041 49762983 ~ 49763258 (+)
G27251 NA non-coding upstream 641215 49634856 ~ 49635084 (+)
G27248 NA non-coding upstream 647502 49628534 ~ 49628797 (+)
G27312 NA non-coding downstream 11263 50287770 ~ 50287973 (+)
G27313 NA non-coding downstream 35026 50311533 ~ 50311766 (+)
G27322 NA non-coding downstream 86227 50362734 ~ 50418780 (+)
G27318 NA non-coding downstream 132529 50409036 ~ 50410284 (+)
G27333 NA non-coding downstream 270101 50546608 ~ 50549982 (+)
G27238 LOC107747660 other upstream 828078 49447845 ~ 49448221 (+)
G27075 NA other upstream 1533860 48741214 ~ 48742439 (+)
G26995 NA other upstream 1634394 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 1658224 48578803 ~ 48618075 (+)
G26915 NA other upstream 1960405 48278267 ~ 48315894 (+)
moxd1 moxd1,LOC107737327 other downstream 63057 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 468376 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 493356 50769863 ~ 50772162 (+)
G27489 NA other downstream 897981 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 1806775 52083282 ~ 52090633 (+)

Expression



Co-expression Network