G27333


Basic Information

Item Value
gene id G27333
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 50546608 ~ 50549982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36711
cttgtctcatttgtaaccccgcccccttgttagctcccacaggtgtcccttatgtttgcctgtatataataccccatgtgctccttgttCTGTGTCGTGCTTTGTTTGATCTAGTCCTGTTTCTCTGTCAGAATCttgtttagttgtgtttttgCGCCTTTGAGCCTTTTTGTCTGcagtgttctggtttgttttctttagtttatttatttgtttgaccTTGTCCcgtgtgtttgttatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36711 True 243 lncRNA 0.41 2 50546608 50549982

Neighbor

gene id symbol gene type direction distance location
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding upstream 30664 50512953 ~ 50515944 (+)
LOC111191919 NA coding upstream 1212686 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 1646374 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 1650629 48884002 ~ 48895979 (+)
ginm1 ginm1 coding upstream 1823698 48711573 ~ 48722910 (+)
lrp11 lrp11 coding downstream 156267 50706249 ~ 50723932 (+)
lats1 lats1,LOC107660506 coding downstream 208043 50758025 ~ 50768239 (+)
ube2j1 ube2j1 coding downstream 346379 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 430533 50980515 ~ 51030792 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding downstream 534086 51084068 ~ 51145395 (+)
G27322 NA non-coding upstream 127828 50362734 ~ 50418780 (+)
G27318 NA non-coding upstream 136324 50409036 ~ 50410284 (+)
G27313 NA non-coding upstream 234842 50311533 ~ 50311766 (+)
G27312 NA non-coding upstream 258635 50287770 ~ 50287973 (+)
G27309 NA non-coding upstream 270101 50276299 ~ 50276507 (+)
G27369 NA non-coding downstream 124575 50674557 ~ 50675496 (+)
G27370 NA non-coding downstream 152389 50702371 ~ 50703121 (+)
G27463 NA non-coding downstream 422955 50972937 ~ 50973244 (+)
G27481 NA non-coding downstream 612643 51162625 ~ 51167564 (+)
G27491 NA non-coding downstream 637881 51187863 ~ 51188330 (+)
moxd1 moxd1,LOC107737327 other upstream 138038 50339564 ~ 50408570 (+)
G27238 LOC107747660 other upstream 1098387 49447845 ~ 49448221 (+)
G27075 NA other upstream 1804169 48741214 ~ 48742439 (+)
G26995 NA other upstream 1904703 48555797 ~ 48641905 (+)
nup43 nup43 other downstream 194901 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 219881 50769863 ~ 50772162 (+)
G27489 NA other downstream 624506 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 1533300 52083282 ~ 52090633 (+)
G27683 LOC108412685 other downstream 1764043 52314025 ~ 52314266 (+)

Expression


Co-expression Network