G27523


Basic Information

Item Value
gene id G27523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51184728 ~ 51185242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36958
tgaaatatctgcattttacacgcATTTTTTGCGTttgttgtcaaactactcctagcaaatttgttgaattctcttggtatttggtaaaaataaacattgaacatatctgatgataaattgtgaaggaatagtcgatatctcaaaCGAGCAGGAAATGGCGGACGGTTGAATTTTTGAGATGCCACATCAAAACAGGATCTTGACacctaggtgttgctaggtgttttaAGGAAGTTATAACAGAGAAAAGCTCACAAAATTTCACCGGCCTGCTTATCTGAGGCTGTTGTTTGATCTAAaattagaatttcaaatacATATGTTTTAACGACGCTATAGCGCCACCTGTActttaaatggatatttcacatgtttaacaggatagaaaactcttgaagAGTGGCACACTAAATAAGACCTCAAAATTACTTTcaccggtttctcggtttggcccggtacgatttgcgctgttatgcgagggccctacgtccccctgtgacagggggacaactcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36958 True 515 lncRNA 0.51 1 51184728 51185242

Neighbor

gene id symbol gene type direction distance location
pnrc1 NA coding downstream 6377 51174484 ~ 51178351 (-)
pm20d2 pm20d2 coding downstream 10338 51149463 ~ 51174390 (-)
ankrd6 ankrd6 coding downstream 329413 50779334 ~ 50855315 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding downstream 481610 50582347 ~ 50703118 (-)
LOC103033334 NA coding downstream 604046 50573760 ~ 50580682 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding upstream 60547 51245789 ~ 51421392 (-)
LOC103038926 NA coding upstream 270415 51455657 ~ 51460083 (-)
LOC103045300 NA coding upstream 280042 51465284 ~ 51481876 (-)
lztfl1 lztfl1,LOC107701792 coding upstream 299526 51484768 ~ 51495272 (-)
LOC103029105 NA coding upstream 1079806 52265048 ~ 52272380 (-)
G27504 NA non-coding downstream 140521 51039630 ~ 51044207 (-)
G27502 LOC108427479,LOC103380695 non-coding downstream 153427 51029156 ~ 51031301 (-)
G27461 NA non-coding downstream 212072 50954618 ~ 50972656 (-)
G27454 NA non-coding downstream 298832 50885531 ~ 50885896 (-)
G27428 nup43 non-coding downstream 437845 50744958 ~ 50746883 (-)
G27619 NA non-coding upstream 575682 51760924 ~ 51761490 (-)
G27621 NA non-coding upstream 600820 51786062 ~ 51789157 (-)
G27623 NA non-coding upstream 657692 51842934 ~ 51844943 (-)
G27626 NA non-coding upstream 714305 51899547 ~ 51900123 (-)
G27628 NA non-coding upstream 720845 51906087 ~ 51906467 (-)
pcmt1 pcmt1 other downstream 444294 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 645056 50522899 ~ 50539672 (-)
G27400 NA other downstream 653089 50481889 ~ 50531639 (-)
G27258 NA other downstream 1545284 49638759 ~ 49639444 (-)
G27145 NA other downstream 2293700 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 1108638 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 1601230 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 2436829 53622071 ~ 53622358 (-)
akap7 NA other upstream 2557638 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 2864553 54049795 ~ 54055697 (-)

Expression


Co-expression Network