G27619


Basic Information

Item Value
gene id G27619
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51760924 ~ 51761490 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37063
aatgctattgctgctcagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctcagtgaataagctagctagcttagcggttagcatctagctaatgctattgctgctcagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggta
>TU37065
aatgctattgctgctcagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctcagtgaataagctagctagcttagcggttagcatctagctaatgctattgctgctccagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37063 False 390 lncRNA 0.44 2 51760924 51761490
TU37065 True 391 lncRNA 0.43 2 51760924 51761490

Neighbor

gene id symbol gene type direction distance location
lztfl1 lztfl1,LOC107701792 coding downstream 265652 51484768 ~ 51495272 (-)
LOC103045300 NA coding downstream 279048 51465284 ~ 51481876 (-)
LOC103038926 NA coding downstream 300841 51455657 ~ 51460083 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 339532 51245789 ~ 51421392 (-)
pnrc1 NA coding downstream 582573 51174484 ~ 51178351 (-)
LOC103029105 NA coding upstream 503558 52265048 ~ 52272380 (-)
cgrrf1 NA coding upstream 613026 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 676967 52438457 ~ 52445807 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding upstream 689813 52451303 ~ 52456147 (-)
LOC111188512 NA coding upstream 723244 52484734 ~ 52490887 (-)
G27523 NA non-coding downstream 575682 51184728 ~ 51185242 (-)
G27504 NA non-coding downstream 716717 51039630 ~ 51044207 (-)
G27502 LOC108427479,LOC103380695 non-coding downstream 729623 51029156 ~ 51031301 (-)
G27461 NA non-coding downstream 788268 50954618 ~ 50972656 (-)
G27454 NA non-coding downstream 875028 50885531 ~ 50885896 (-)
G27621 NA non-coding upstream 24572 51786062 ~ 51789157 (-)
G27623 NA non-coding upstream 81444 51842934 ~ 51844943 (-)
G27626 NA non-coding upstream 138057 51899547 ~ 51900123 (-)
G27628 NA non-coding upstream 144597 51906087 ~ 51906467 (-)
G27630 NA non-coding upstream 176611 51938101 ~ 51938355 (-)
pcmt1 pcmt1 other downstream 1020490 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 1221252 50522899 ~ 50539672 (-)
G27400 NA other downstream 1229285 50481889 ~ 50531639 (-)
G27258 NA other downstream 2121480 49638759 ~ 49639444 (-)
G27145 NA other downstream 2869896 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 532390 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 1024982 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 1860581 53622071 ~ 53622358 (-)
akap7 NA other upstream 1981390 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 2288305 54049795 ~ 54055697 (-)

Expression


Co-expression Network