G27621


Basic Information

Item Value
gene id G27621
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 51786062 ~ 51789157 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37067
CACAGAACAGAATATCTGGAGGATATCACGGAGGACTTCTATCTGTGGATCATCTCTGGTAAAGGCTGCATGTTGGTGGCTGCTGCTCTCCTGTGAGTCAAGCTGTGGAGCGTGCTAGCTTGCCATGTCGGAACAAAACAGCAGAGCATGAGGTTCGCTTCACACCGTTTCAACAGGCACTGATATCTGCTCCTCCTGTGAGTTCCTGATGAACGGAAGCCACTTTGGCAAGCTGGTGTTTAAAATCTGTATCCCCtccagccctgagagagagagagagcatgagagagagagagagagagagagagagagagagcatgagagagagagagagagaaaagcaatCCCTTTACCCCTTTCCATTTTATTGAGAGCACAATGGTGTGAACTCCACTCctctcttgctgtgtgtgtgtgtgtgtgtgctctgagcCTAGGGTTGCCATGGCGATAATGAGGGAATTCATCGAGCCTTCTCGTCCTAGTGTCAGTAATTCGGTTATTTTAGTGTGAAAGAGATAGAACTCCATGATGACACAGCTAcagaaagagaacgagagagtaagcgaaagagagagagaaatagagaaagagaacgagagagcaagcgagagagagtgagcgagagagcaagagctGGCACAATGGGAAAAGGGGAATTAAAATTCAAATGGAGACCAGGGCCACTATATTTAAGATTATAGTGAGATGGAGGAGTCTGATGGGACTGAACAATGGCTGAACAGCGAACAGACGGTGCGAGCGCGATCTCATTCTCATTCCCCGTTCCTCCATTTCTTCGCTAATAAACGTTAATCTACGGCTGTCAGTCACAGGCTCACACAGACACGGAAGCAATTTCCTCCTACAGCACTGAAAGAACAGGAAGGATTTCTGCTATTacgtatgtgtttgtgtgtatttgtatgtgttttggtgtgttggAAAGCATAGAGGAGAGATCTACTATAGGAACTTGACAATAAAGGTACTTTTCAATGCTTCAACAGGAGCCACTTGACCCATGTGGAGCCAGAGAGACTCTAAATTGTGTTAATTCagtcaataacacaataacaccaCAATTACTGCCTTATGTTTGCAGAAATAACCTCTAATTAGGATTTTCAAAAATGTCAGTGGGTAGAGAAAGGGTAAATGTGCAAGCCTAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37067 True 1174 lncRNA 0.45 3 51786062 51789157

Neighbor

gene id symbol gene type direction distance location
lztfl1 lztfl1,LOC107701792 coding downstream 290790 51484768 ~ 51495272 (-)
LOC103045300 NA coding downstream 304186 51465284 ~ 51481876 (-)
LOC103038926 NA coding downstream 325979 51455657 ~ 51460083 (-)
gli3 gli3,LOC102779559,LOC108444237,LOC107675308 coding downstream 364670 51245789 ~ 51421392 (-)
pnrc1 NA coding downstream 607711 51174484 ~ 51178351 (-)
LOC103029105 NA coding upstream 475891 52265048 ~ 52272380 (-)
cgrrf1 NA coding upstream 585359 52374516 ~ 52382949 (-)
LOC103031417 gjd2b,LOC103031417,LOC108414321,LOC107582173,LOC107740303,LOC105892965 coding upstream 649300 52438457 ~ 52445807 (-)
LOC103031734 zgc:86709,actc1,ACTC1,actc1a,act2,LOC108414322,LOC106531354,LOC105024319 coding upstream 662146 52451303 ~ 52456147 (-)
LOC111188512 NA coding upstream 695577 52484734 ~ 52490887 (-)
G27619 NA non-coding downstream 24572 51760924 ~ 51761490 (-)
G27523 NA non-coding downstream 600820 51184728 ~ 51185242 (-)
G27504 NA non-coding downstream 741855 51039630 ~ 51044207 (-)
G27502 LOC108427479,LOC103380695 non-coding downstream 754761 51029156 ~ 51031301 (-)
G27461 NA non-coding downstream 813406 50954618 ~ 50972656 (-)
G27623 NA non-coding upstream 53777 51842934 ~ 51844943 (-)
G27626 NA non-coding upstream 110390 51899547 ~ 51900123 (-)
G27628 NA non-coding upstream 116930 51906087 ~ 51906467 (-)
G27630 NA non-coding upstream 148944 51938101 ~ 51938355 (-)
G27632 NA non-coding upstream 215090 52004247 ~ 52004744 (-)
pcmt1 pcmt1 other downstream 1045628 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 1246390 50522899 ~ 50539672 (-)
G27400 NA other downstream 1254423 50481889 ~ 50531639 (-)
G27258 NA other downstream 2146618 49638759 ~ 49639444 (-)
G27145 NA other downstream 2895034 48886994 ~ 48891028 (-)
LOC103040973 NA other upstream 504723 52293880 ~ 52321920 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other upstream 997315 52786472 ~ 52849906 (-)
trnal-cag NA other upstream 1832914 53622071 ~ 53622358 (-)
akap7 NA other upstream 1953723 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 2260638 54049795 ~ 54055697 (-)

Expression


Co-expression Network