G27643


Basic Information

Item Value
gene id G27643
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52090853 ~ 52092447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37091
TCCAGCAGATatgcagttctggaaaaaattaagagcccacttcagtttctgaatcagtttctctgatttgactatttataggtatatgtttaaagaaaatgaacattgttgtttttattctataaactacagacaacatttctcccaaatttcaagtaaaatattgtcatttagagcatttattttcagaataaCCCTTTTtgtaaatcacagttttcatgcatcctccaccagtcttacacactgcttttggataactttatgccgcccctggtgcaaaaattcaagcagttcagcttggtctgacggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaataaaagaaactcatcatttttaagtggtctcttattttttccagagctgtgtataaaaGTTAAGACTTAAAAAATCCACCACCAGTTTTGTgttctattttgttttgtttttcctccCAAAGTCTGCAGTGGTTTAGATGTAATCAGAGTGGTTTAATGGGAGATGGTTCCGTGAAGAGAAGCTTAAGTCAGATTTTGCTACAGTGGTGATAGATAATAGACAACGGGGACCTGCATGGCTTCATTGCAAAATTACTGATATGCCCaaaatcatgggacaggaactagtatcttGTACTATTACTTTTGCCGTAGCCGATGGAATgtaaatgatgatgattatgatgatgcaTTGACCTGCAGAATATGAGTCTCTTTTCTGTGTGCATGGgaaattctagccagacacgaCAGGTTATGATCATTACACCCACTgagctgtctactgtgggtggtaatgacttCTATAATGTATTCTTGGTACACATTTGAGACTGTAGGTTGAGAAATGGTACAGTAAATGCCTCCTGAAGTCCCACTTTACAATCAATTTACAGTGTATTGCTAtcacatgacttttggcatttcagTGCATGTCTTAGGCCAAAGTTTACTCTGATATACTGTTGTGATTAAGCATTAATAAGGCATTAAACCCTTTTGTTGTCTATTTCCTACCATCTCCACCATAAGAATAATTCTGACTTAAGCTTCTCTAGACTGGTGCGTTTCAGATCAAACACTTGGACGAGGGTTCAAGGGCTAGATTGAAAatctgtgatttaaagcagcatcTGTACTTGAGTTGTTGTCTCTTGTCTCCTCTTTAAGGCTGTGCACGTATGAACAGCCCTGCTTGTCTCCTCGGTTGTTTTAAAGTCGTGGTCTTTGAATGTGTGTACACTTGCCGAgccaggctctctctctctctctctctctcatgtaaaCTGCTTCCTTCTCTCTGTTTGTGGGTAAATGTCTCCAAGCTTCTGTGGCCTTGAAtctgatgagaaaaaaaaagaacttatttaaacatgtttttcatgttgtttattttgcttCCCGAGCAGATGGCTGACGTCTCGACGGCAAATAAAGATGATTTATGACCAAAAGATTATTTAGCTGTGacgccctgtttttttttttttttaaccagcatGCACTTTGCCTCTCATTTCATGTTCTTCTCGTCTCGCCGTCCAGAG

Function

GO: NA

KEGG:

id description
ko04970 Salivary secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU37091 True 1574 lncRNA 0.38 2 52090853 52092447

Neighbor

gene id symbol gene type direction distance location
tmx3 tmx3 coding upstream 395836 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 506756 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 868780 51192823 ~ 51222073 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 945458 51084068 ~ 51145395 (+)
LOC103030377 LOC108427479,LOC108256881 coding upstream 1060061 50980515 ~ 51030792 (+)
LOC103029411 NA coding downstream 229545 52321992 ~ 52327802 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 275436 52367883 ~ 52374147 (+)
ddhd1 NA coding downstream 290498 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 311435 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 376325 52468772 ~ 52468843 (+)
G27633 NA non-coding upstream 82628 52007914 ~ 52008225 (+)
G27563 NA non-coding upstream 554957 51479326 ~ 51535896 (+)
G27495 NA non-coding upstream 863222 51227422 ~ 51227631 (+)
G27494 NA non-coding upstream 863523 51227092 ~ 51227330 (+)
G27491 NA non-coding upstream 902523 51187863 ~ 51188330 (+)
G27662 NA non-coding downstream 90932 52183379 ~ 52183744 (+)
G27664 NA non-coding downstream 111438 52203885 ~ 52204371 (+)
G27665 NA non-coding downstream 115579 52208026 ~ 52208541 (+)
G27674 NA non-coding downstream 204595 52297042 ~ 52297262 (+)
G27675 LOC108412685 non-coding downstream 206332 52298779 ~ 52298997 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 220 52083282 ~ 52090633 (+)
G27489 NA other upstream 912479 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1318691 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1336892 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 1682283 50339564 ~ 50408570 (+)
G27683 LOC108412685 other downstream 221578 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 361984 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 667666 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1530376 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1530735 53623182 ~ 53623253 (+)

Expression


Co-expression Network