G27676 (LOC108412685)


Basic Information

Item Value
gene id G27676
gene name LOC108412685
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52302169 ~ 52302711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37127
CTGGTTGGTCGCAGTTAGCATGTGCTGTCCCCGGCAGCGTCCGTGTTCCTACTCTCTCCTGCCCCCTGCTGTCCACGCACCAGCAGTGTCCAGTTGATCCCAGACATTGCAGTGGTTTGTACTGGCCCTTCTCATCACACTGAGGGATGTAATCCTGCAGCATGGCGTCACCCCCCCAACTCTGCAGACCCTTCAACAGACTGTCTCTGTGGCGCTCACACACTGACATGACCAGCTCCACCTGCTCTGGGGAATAAACAGAGTAACCACTGCTCAAATTCACTGACTATCAGTCACAACTGTTATGCTAAGTAATGATGGATCAGACAGAAATATGCTGCGGTCTGATGAATTAAtcattaggattttttttggataattGTGGTCTGAAGTTTGGCTTTTTTGCCAGAGCCACTTTTAAGCGTTAGTTTTTTCCATCTAGGGAAGAATATGTGGcaaatgtatattaaatgattaatgatcatattttaaaattgtattattgtatgaAGCATGAAGTAGCTACAGCTGTGAACACTGATA

Function

NR:

description
PREDICTED: nidogen-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37127 True 543 lncRNA 0.45 1 52302169 52302711

Neighbor

gene id symbol gene type direction distance location
tmx3 tmx3 coding upstream 607152 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 718072 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1080096 51192823 ~ 51222073 (+)
gabrr1 LOC108427508,LOC108256869,LOC102218978,LOC103457991,LOC103150855,LOC107392250,LOC108423527 coding upstream 1156774 51084068 ~ 51145395 (+)
LOC103030377 LOC108427479,LOC108256881 coding upstream 1271377 50980515 ~ 51030792 (+)
LOC103029411 NA coding downstream 19281 52321992 ~ 52327802 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding downstream 65172 52367883 ~ 52374147 (+)
ddhd1 NA coding downstream 80234 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 101171 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 166061 52468772 ~ 52468843 (+)
G27675 LOC108412685 non-coding upstream 3172 52298779 ~ 52298997 (+)
G27674 NA non-coding upstream 4907 52297042 ~ 52297262 (+)
G27665 NA non-coding upstream 93628 52208026 ~ 52208541 (+)
G27664 NA non-coding upstream 97798 52203885 ~ 52204371 (+)
G27662 NA non-coding upstream 118425 52183379 ~ 52183744 (+)
G27678 NA non-coding downstream 852 52303563 ~ 52304228 (+)
G27680 NA non-coding downstream 7016 52309727 ~ 52309938 (+)
G27681 NA non-coding downstream 8124 52310835 ~ 52311048 (+)
G27682 NA non-coding downstream 10324 52313035 ~ 52313234 (+)
G27684 NA non-coding downstream 12401 52315112 ~ 52315495 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 211536 52083282 ~ 52090633 (+)
G27489 NA other upstream 1123795 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1530007 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1548208 50744883 ~ 50753961 (+)
moxd1 moxd1,LOC107737327 other upstream 1893599 50339564 ~ 50408570 (+)
G27683 LOC108412685 other downstream 11314 52314025 ~ 52314266 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 151720 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 457402 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1320112 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1320471 53623182 ~ 53623253 (+)

Expression


Co-expression Network