G27716


Basic Information

Item Value
gene id G27716
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52379856 ~ 52381005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37186
TATATGTTTCTCTGTGCTCAGTGTTGGCCAGGGTCAGAACAGCTACTAACGGGTACCGGTCCCTTGGGAGCGGCCCAAAGTCGGTCACTCCAAGATCTGCTGGCAGCTCTGTGAAACACTCCTTTCGCTCCTCCTTCTGTAACTGGAAGGTCTGGCAGTGGAGGTAGTGAAGCTGCAGGGCCTGCTGGAACAGCTGTGGCGTGGAGAGAGCAGTGTCATGCTGGTGTTTCTGCAGTGCAGCTTGAAGAACCTGAACTCCACAACCCCAATAACAACTCAGTACACACTCCTCCAGACAGTATGACTGAAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37186 True 313 lncRNA 0.53 2 52379856 52381005

Neighbor

gene id symbol gene type direction distance location
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 5709 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 52054 52321992 ~ 52327802 (+)
tmx3 tmx3 coding upstream 684839 51586207 ~ 51695017 (+)
dnajc13 dnajc13 coding upstream 795759 51503220 ~ 51584097 (+)
rngtt rngtt coding upstream 1157783 51192823 ~ 51222073 (+)
ddhd1 NA coding downstream 1940 52382945 ~ 52400818 (+)
LOC103030894 NA coding downstream 22877 52403882 ~ 52412080 (+)
trnac-gca_8 NA coding downstream 87767 52468772 ~ 52468843 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 193933 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 388237 52769242 ~ 52781864 (+)
LOC111188740 NA non-coding upstream 15684 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 31600 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 64361 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 66622 52313035 ~ 52313234 (+)
G27681 NA non-coding upstream 68808 52310835 ~ 52311048 (+)
G27763 meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920 non-coding downstream 147723 52528728 ~ 52531000 (+)
G27772 NA non-coding downstream 222941 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 286330 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 523315 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 648804 53029809 ~ 53030010 (+)
G27683 LOC108412685 other upstream 65590 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 289223 52083282 ~ 52090633 (+)
G27489 NA other upstream 1201482 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1607694 50769863 ~ 50772162 (+)
nup43 nup43 other upstream 1625895 50744883 ~ 50753961 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other downstream 73426 52454431 ~ 52456164 (+)
LOC111188765 glrx5,LOC106571612 other downstream 379108 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1241818 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1242177 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1242444 53623449 ~ 53623521 (+)

Expression


Co-expression Network