G27763 (meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920)


Basic Information

Item Value
gene id G27763
gene name meis1,LOC103032373,LOC100690952,LOC106953003,LOC102195920
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52528728 ~ 52531000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37241
CCTGTTCATGGTGCCGGTCTGGAGGGTTACATGTAGTGCCACTGTCCGTCCATGCCCATGTTCATGCCCATACCACCCATTGGACCTGctGCAGGTCGTAGACCCATATGCTGCTGACCATCCAGAACAAAGCCTCCCATTGGCTGCCCATCCGGACTGTACGGGGTTCCCTGGCTCACTGCTCTGTTGGACTGGTCAATCATGGGCTGAACTATCCTTCTCCTGGCATTAATAAacCAGTTATTCACTTGGAGGATGGTGAGGCCTGTGTCCTGAGCTAGCTGCTTCTTCTGTTCTTCAGAGGGGTAGGggtg

Function

symbol description
meis1 Enables DNA binding activity. Predicted to be involved in several processes, including angiogenesis; animal organ development; and negative regulation of myeloid cell differentiation. Predicted to act upstream of or within several processes, including hemopoiesis; lens morphogenesis in camera-type eye; and negative regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
homeobox protein Meis1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37241 True 314 lncRNA 0.45 4 52528728 52531000

Neighbor

gene id symbol gene type direction distance location
trnac-gca_8 NA coding upstream 59885 52468772 ~ 52468843 (+)
LOC103030894 NA coding upstream 116648 52403882 ~ 52412080 (+)
ddhd1 NA coding upstream 127910 52382945 ~ 52400818 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 coding upstream 154581 52367883 ~ 52374147 (+)
LOC103029411 NA coding upstream 200926 52321992 ~ 52327802 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding downstream 43938 52574938 ~ 52609821 (+)
LOC111188745 NA coding downstream 238242 52769242 ~ 52781864 (+)
LOC103033541 LOC108413844,LOC108417958 coding downstream 254659 52785659 ~ 52789369 (+)
LOC111188773 LOC108417958 coding downstream 280053 52811053 ~ 52816494 (+)
LOC103041583 LOC108417958 coding downstream 294184 52825184 ~ 52829284 (+)
G27716 NA non-coding upstream 147723 52379856 ~ 52381005 (+)
LOC111188740 NA non-coding upstream 164556 52362005 ~ 52364172 (+)
G27701 NA non-coding upstream 180472 52342948 ~ 52348256 (+)
G27684 NA non-coding upstream 213233 52315112 ~ 52315495 (+)
G27682 NA non-coding upstream 215494 52313035 ~ 52313234 (+)
G27772 NA non-coding downstream 72946 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding downstream 136335 52667335 ~ 52672114 (+)
G27834 NA non-coding downstream 373320 52904320 ~ 52904678 (+)
G27849 NA non-coding downstream 498809 53029809 ~ 53030010 (+)
G27873 NA non-coding downstream 772928 53303928 ~ 53304405 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other upstream 72564 52454431 ~ 52456164 (+)
G27683 LOC108412685 other upstream 214462 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 438095 52083282 ~ 52090633 (+)
G27489 NA other upstream 1350354 51174488 ~ 51178374 (+)
lyrm2 lyrm2 other upstream 1756566 50769863 ~ 50772162 (+)
LOC111188765 glrx5,LOC106571612 other downstream 229113 52760113 ~ 52768976 (+)
trnah-gug NA other downstream 1091823 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 1092182 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 1092449 53623449 ~ 53623521 (+)
trnam-cau_5 NA other downstream 1092617 53623617 ~ 53623689 (+)

Expression


Co-expression Network