G27821 (LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958)


Basic Information

Item Value
gene id G27821
gene name LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52786472 ~ 52849906 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37325
ACCTTTGAAATAGATGTAGTTGATGAGCATCATCACAGTCTGCTGGTCCAGGGTCTCGATCATGTCAGTGATCATGTCCTTGGTCTTTTTGGCGATgtacttgtttatttcttgAACAGCGACTTCAGGTTTGGAGTAGTCCACAGTGAAGGCCTCTCCTTGGTAGAAATGCTGAGCATCTTTCAGAAACTTGTCAACGGGCTTAAAGCCTTCTCGGACAGCCACAGCACTTCCTGCCTCTAGCAGCATGGCCTCTTGGCTGTGTCCCAACATGTGGAGCAGGTGCTCGTAACCTTCATTGACCTGATCAGGAGTGAGGGTGCTGTAGCCCAGGGTGCTGAAGATCTGAGAGTGGGTGTTACCTTTAGCCCCCAGAGCCAGCATGGACAGAGCCATGGAGATGCTCAGTGGAGAGAAGAAGATGTTCTTGCCTTTGGCTTCAGGGTGGGTGGAGAGCTTCTTGTAGAGGGAGAAGGCGAAGTCGGCGTTGTGGGGGGAGAGTCTGTGGCATATATCATCCTCTCCTTCGTGGCTGGGGTGAGGTTCATCCTTACCATGGTGGAGATGTTGATCATGGTTTCCCTGCGGGGCAGCCCAGGCCACTGTCAGCAGAAGGGCACCCAAGAAACAGCCTTTTCCCCACATTTTATCACCTgga
>TU37335
TACCTCTGAAATAGATGTAGTTGATGAGCATCATCACAGTACTGTGGATCCAGGGTCTTGACCATGTCAGTGATCATGTCCTTGGTCTTTTTGGCGATGTACTTGTTGATTTCTTGCACAGCGACTTCAGGTTTGGAGTAGTCCACAGTGAAGGCTTCACCTTCGTAAAAATGCTGAGCATCTTTCAGAAACTTGTCGACGGGTTTGAAGCCTTCCTGAACAGCAAGAGCACTTCCTGCCTCCAGCAGCATGGCATCCTGGTTGTGGTCCAGCATGTGGAACAGGTGCTCGTAACCTTCATTGACCTGATCAGGAGTGAGGGTGCTGTAGCCCAGGGTGCTGAAGATCTGAGAGTGGGTGTTACCTTTAGCCCCCAGAGCCAGCATGGACAGAGCCATGGAGATGCTCAGTGGAGAGAAGAAGATGTTCTTGCCTTTGGCTTCAGGGTGGGTGGAGAGCTTCTTGTAGAGGGAGAAGGCGAAGTCGGCGTTGTGGGGGGAGAGTCTGTGGCATATATCATCCTCTCCTTCGTGGCTGGGGTGAGGTTCATCCTTACCATGGTGGAGATGTTGATCATGGTTTCCCTGCGGGGCAGCCCAGGCCACTGTCAGCAGAAGGGCACCCAAGAAACAGCCTTTTCCCCACATTTTATCACCTgga
>TU37336
tttgctttCATTGGATGCCATGTTGTAGCCAAAACTGAAAAGCTGGTAGTGAAAATTACCTGTAGGATAATTTGTCATGCCAGTATTTGATATGATCTTTGCTGATGTTCCTCTCCAGATCCTGCATCTTCCCCTCATCAGGAAGAATGAGCATCATGGATGCGTTGCCTTTATAGGGCACCTTTATAATTGAAGTGGAATTGTCCCAGTCTATGTAGAAATGGTATCGTCCCGTGTTCTGCATCATGTCCACAGTCACCTTGGTGTTATCATCCACATGAAAGTCGGCTTTTTGGGTAAACCTTTGTTCAAAAGGCTTCTTCCATTACCTCTGAAATAGATGTAGTTGATGAGCATCATCACAGTCTGTGGGTCCAGGGTCTTGACCATGTCAGTGATCATGTCCTTGGTCTTTTTGGCGATgtacttgtttatttcttgAACAGCGACTTCAGGTTTGGAGTAGTCCACAGTGAAGGCCTCTCCTTGGTAGAAATGCTGAACATCTTTCAGAAACTTGTCGACGGGCTTGAAGTCTTCTCGGACAGCCACAGCACTTCCTGCCTCCAGCAGCATTTCGTCCTGACTGTGGTCCAGCATGTGGAGCAGGTGCTCGTAACCTTCATTGACCTGATCAGGAGTGAGGGTGCTGTAGCCCAGGGTGCTGAAGATCTGAGAGTGGGTGTTACCTTTAGCCCCCAGAGCCAGCATGGACAGAGCCATGGAGATGCTCAGTGGAGAGAAGAAGATGTTCTTGCCTTTGGCTTCAGGGTGGGTGGAGAGCTTCTTGTAGAGGGAGAAGGCGAAGTCGGCGTTGTGGGGGGAGAGTCTGTGGCATATATCATCCTCTCCTTCGTGGCTGGGGTGAGGTTCATCCTTACCATGGTGGAGATGTTGATCATGGTTTCCCTGCGGGGCAGCCCAGGCCACTGTCAGCAGAAGGGCACCCAAGAAACAGCCTTTTCCCCACATTTTATCACCTgga

Function

NR:

description
PREDICTED: alpha-1-antitrypsin homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37325 False 658 lncRNA 0.45 2 52786472 52812630
TU37335 False 660 TUCP 0.03 3 52786472 52849906
TU37336 True 985 TUCP 0.49 3 52786472 52827953

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5,LOC106571612 coding downstream 20628 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 69405 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 144888 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 232200 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 295585 52484734 ~ 52490887 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding upstream 484059 53333965 ~ 53410069 (-)
med23 med23 coding upstream 839461 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 1313196 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 1618111 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1792109 54642015 ~ 54652464 (-)
G27808 NA non-coding downstream 3992 52782025 ~ 52782480 (-)
G27798 NA non-coding downstream 6579 52720661 ~ 52779893 (-)
G27755 NA non-coding downstream 306934 52479262 ~ 52479538 (-)
G27738 NA non-coding downstream 385276 52365841 ~ 52401196 (-)
G27690 NA non-coding downstream 477705 52308348 ~ 52308767 (-)
G27836 NA non-coding upstream 54871 52904777 ~ 52905476 (-)
LOC111188804 NA non-coding upstream 88502 52938408 ~ 52942055 (-)
G27851 NA non-coding upstream 181777 53031683 ~ 53033709 (-)
G27852 NA non-coding upstream 183875 53033781 ~ 53034003 (-)
G27855 NA non-coding upstream 189536 53039442 ~ 53040685 (-)
LOC103040973 NA other downstream 464552 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2046038 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2246800 50522899 ~ 50539672 (-)
G27400 NA other downstream 2254833 50481889 ~ 50531639 (-)
G27258 NA other downstream 3147028 49638759 ~ 49639444 (-)
trnal-cag NA other upstream 772165 53622071 ~ 53622358 (-)
akap7 NA other upstream 892974 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1199889 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1706982 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 2416185 55266091 ~ 55314179 (-)

Expression


Co-expression Network