G27822


Basic Information

Item Value
gene id G27822
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 52797565 ~ 52816766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37337
CCCAGCTATACAGCTAGGGTAAGAGTTAGAGGAAGTAGCCCTAATTTATAGGCTTGTAACTCTGGCTGTGAGTCACATGCTGGCTCATGATtggatgcaaagctttcagtaGAAACACTGGAGCAGAGCGAGTTGCTCTGTAGACCACAGAGGGTTCATTTATAAATCTGGTGATTCCAAGCTTTTAAATGGTTTACCTAAAGATACAACAGTTCTGACAGGTAATACTGGCAGCCTTTTGGttattattaagcaaataataagtcattaaattgcattttagagtttgtttatttattgatttaatatGCCAACAAAAGAGAAACAGCCTTATAATGGATGCAACATTTTTACATCTGCCTGATACGTAACATTTGATGGATATTCAGCAGCTTTTACTCAGTGGGGTTGTTGATCTTGCCCATGAAGAGGATGCTCCTGGTGCTGGAATCCAAAATAAACACCAGGAATGGTCTGTTGAGAACCATGATTTCAGAGATTTGAAATGATGTCAACACGATCTctatggtggtggtagcagcTGCTTCAGTGCCCTCCTCATTAACTTTAAGCACTGCCTGATGGAGGACCTGTGGGAAAATCATCAAAAAGAAGTGT

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37337 True 618 lncRNA 0.40 2 52797565 52816766

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5,LOC106571612 coding downstream 31721 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 80498 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 155981 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 243293 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 306678 52484734 ~ 52490887 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding upstream 517199 53333965 ~ 53410069 (-)
med23 med23 coding upstream 872601 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 1346336 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 1651251 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1825249 54642015 ~ 54652464 (-)
G27808 NA non-coding downstream 15085 52782025 ~ 52782480 (-)
G27798 NA non-coding downstream 17672 52720661 ~ 52779893 (-)
G27755 NA non-coding downstream 318027 52479262 ~ 52479538 (-)
G27738 NA non-coding downstream 396369 52365841 ~ 52401196 (-)
G27690 NA non-coding downstream 488798 52308348 ~ 52308767 (-)
G27836 NA non-coding upstream 88011 52904777 ~ 52905476 (-)
LOC111188804 NA non-coding upstream 121642 52938408 ~ 52942055 (-)
G27851 NA non-coding upstream 214917 53031683 ~ 53033709 (-)
G27852 NA non-coding upstream 217015 53033781 ~ 53034003 (-)
G27855 NA non-coding upstream 222676 53039442 ~ 53040685 (-)
LOC103040973 NA other downstream 475645 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2057131 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2257893 50522899 ~ 50539672 (-)
G27400 NA other downstream 2265926 50481889 ~ 50531639 (-)
G27258 NA other downstream 3158121 49638759 ~ 49639444 (-)
trnal-cag NA other upstream 805305 53622071 ~ 53622358 (-)
akap7 NA other upstream 926114 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 1233029 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1740122 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 2449325 55266091 ~ 55314179 (-)

Expression


Co-expression Network