G27875


Basic Information

Item Value
gene id G27875
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53327872 ~ 53330777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37398
agtttaaagttatcttcattgaaaagtacagtgcttttccttcaaaaataaggacgtttcaatgtgaccccaaacttttgaacggtagtgtaaaGGGTTTTATAATTCACCAATTAGCAGGGGCGggtctagaaaaaaatatttatggggTGGCAAGAGGGGTGCAGGAATTTTTGAGGGGTGGCAACATACGGCAGATGTATATACTAAGCAACTGACATCATTGGACCTAGCAAACAATACATGTTAGAGTTgcaaaataagatttttataAGCTCAAAATCAGCACTGCAACTACAGTATACTAGCACTTAATTCTGGGGTGGCAGTAGGGGTGGCAAGGCTTTCATTTAGGGTGGCAGTTGCCACCCTATGCTACCCCGGTAGATCCGCCCATGCCAGTTAGCTTGAAGCTAACTACGTAAATCACCACACACTGTTTTTAACCTGTGTGCAGTGAGCGTAGATTGTTCAGTACTATAATAAGTCATTTAATACTATGAGATGTATGCCCGATACTGTTAGGTGCACACCAGATACTATCAGGTGCTCACTAGATACACTGAAGCCCagtgaacagtgttttttttatcctattAGTCTGTCTATCTATTGCTCACCTGATATTATCAGTTGTTCACCACATTGTATCTGGTGCTCAGCTGATGCTATCAAGTTCCGACCTCGTAGTATGAAGTGTGCACCTGATTATTTGAGTATTTGGTCCTTAACACATATTTTCTAGTGTGCACCTGACAGGATCTAGTGTGCACCTAACAGTATCTGATGCTAATCACATACTATCCAGTGCTCACTGTGTGGTATCTTAAGTGCACACCTTAGAGTATTTGGTGCTTACCACATATTATCTGGTGCTCAATGCTTAATAACTAGTGCTCACCTGGTAGTATCTGCTGCATACAGCATACTTCCTAAATATATTGCAACCTGATCGTATTTGGTGCATACCACATAGTATATACTGTGCATATGATGGCATAAGTTGCTCATCAAATAGTGTCCAGTGCACACCTGATAGTATTTGGTGCTTACCTGGATAATGCCAACTGTGCACTTTACTGTGTCTGGTGTtatacacatatactgtatctagTGTGCACCTAATAGTATCTGGTGTGCACCTGACAGTATCAGGCGTACGTCTCATAGTATTATGCTGTATGCAGTCTAGTGTGCACCCgatagtatctggtgcttaccGCATATTATCTGGTGCACACCTGATAGTATATTGCGTTTACCACATACAATCTAGTGTACACCTGATAGTATATAGTGCTTACCACATACTATCTGGTGCACACCATATAGTATCTAGCAAAGCAAAGGACCCTTTGGATGCTTAAATGTTTTGTTACCTATTTACACACTCTTTAAAAGGTGGAGCTCTTCATAGGTTCTTTAAGAGTTCCTTAAGTAAGTGTCATGGTTCTATTTTGATTCATGGCAACTTAAGGGAATAATCCTTTGATACATCAAAGCCTAAATTGTTTgggtatttttaatttgttctttTTGTCGTGACAGAAACATCTTGCATAGAGTTATTTAGAGAGAAAACACTCAATATAGAACCAAAATGGTTTCtgtactatacagctctggaaaaaaatatgaaaccacttcagtttctaaaatcagtttctcagattttgctctgattttgtcatttagagcatttatttgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaaaatttgatggaataaccctggtttttaaacagtttccatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttataccactcctggtgcaaaagcaagcagttcagcttagtttaatggtttgtgatcatccatcttcctcctgattatatttcagagattttggtgaaatcaaagaaacttaacttttcttaaagtggtctcttattgtttttcagagctgtatcgtGTGAACATGATTTAGCATTTACTACATTTGCACTGCAAACCCATAATACAGTAGTATATAGAGGACAAAACAATGTGAAGGATTGCTTTGACCATAATTAAAAGCTTAAACTTCCTTTAACTCTATGCAACGTCAAGCTATTTCGATTTATTTCCACCACTCAGAACGTCATTCATCTGCCTGTTGTCTAAATGTATGCCACTGCACAGATTTATATGCCTGATGAATTAACTCTGCCACCATTCATTTCAGTCCTCCAACACCTCCCCCACATGTGTCTGGACTTCTGTGTTTGTGAAAGTACTTCTGTGAGCGAGAGTTAGGGCTTCTGAGAGCTTTAGCGTGAATGCAGTGATGAATAGTTAATGGACTACACATCAGTTAAAAAGCCATAAACCTGAGACAGAACGAAGGTCTGTTTCAGGCTTAAGACTGACACACAAaaccatgatgatgatgaagatgaagatgatggtGTAATGTGGAACCAGCCGGTACGAAGCTCCAGAAATACTTTGATGACCACAGAAGTCCGTAGCCCTTTTTTCGTCCTTCAAGACATCTGTTTCCACCACATGTACAAATATCCACGAGTCTGGAGCTTCTGTAGAGAACTGAACACTACACTGCACTGTTAACACTATACAGAAGGCTTATTCATAATGATTAGAGACTTTAAGAACGAGTAAACGCAGGGTTAGCTGGGGATACAGGCTGTACTACTGTATTTCATAGTTTAGGTgcactttatatagttttatgcACTGCAAAATATGAAACCCTAACCTAAACAATCTAGTGTTTTTGGActtctgtaaaacatttcaaattATATTTAGATACTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37398 True 2852 lncRNA 0.39 2 53327872 53330777

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 498588 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 511378 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 538503 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 546008 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 718051 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 632785 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 936607 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 1102946 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 1334631 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1496847 54827624 ~ 54843995 (+)
G27873 NA non-coding upstream 23467 53303928 ~ 53304405 (+)
G27849 NA non-coding upstream 297862 53029809 ~ 53030010 (+)
G27834 NA non-coding upstream 423194 52904320 ~ 52904678 (+)
G27772 NA non-coding upstream 634516 52603946 ~ 52693356 (+)
G27775 c25h14orf132,LOC108413331,LOC105892943,LOC107549545,LOC107582175 non-coding upstream 655758 52667335 ~ 52672114 (+)
G27903 NA non-coding downstream 168698 53499475 ~ 53504424 (+)
G27917 NA non-coding downstream 203823 53534600 ~ 53535225 (+)
G27923 NA non-coding downstream 245999 53576776 ~ 53577198 (+)
G27935 NA non-coding downstream 283000 53613777 ~ 53614007 (+)
G27962 NA non-coding downstream 343811 53674588 ~ 53675007 (+)
LOC111188765 glrx5,LOC106571612 other upstream 558896 52760113 ~ 52768976 (+)
G27729 LOC103457336,LOC100194557,LOC103359577 other upstream 871708 52454431 ~ 52456164 (+)
G27683 LOC108412685 other upstream 1013606 52314025 ~ 52314266 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other upstream 1237239 52083282 ~ 52090633 (+)
G27489 NA other upstream 2149498 51174488 ~ 51178374 (+)
trnah-gug NA other downstream 292046 53622823 ~ 53622894 (+)
trnae-uuc_2 NA other downstream 292405 53623182 ~ 53623253 (+)
trnar-acg NA other downstream 292672 53623449 ~ 53623521 (+)
trnam-cau_5 NA other downstream 292840 53623617 ~ 53623689 (+)
trnah-gug_1 NA other downstream 293291 53624068 ~ 53624139 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1467399 NA non-coding NC_048581.1 CM023235.2 56338833 ~ 56342281 (-)
eurasian perch (Perca fluviatilis) G182694 LOC103355641,LOC104938520 non-coding NC_053129.1 CM020926.1 6283518 ~ 6284813 (-)