G27882


Basic Information

Item Value
gene id G27882
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53327871 ~ 53362114 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37411
ctctctctctctctctctctctctctctctgtctctctctctctctctcttactcacacacactgatacatgtAGTTTTTCCTTCCAATACTAATACAGAGTACAGATAACAATAGattttttagagattttttactcatatctgctgataccagTACAGATAATGATACAAGCTTTTACTTAACTCTTCAATAGGTGCCTATAAATCATGATGTTCATtgcgttactttttttttttacaggttttatttcagtaaaggCAGTGTTCTGCATCCCAAATGAGATATAATAAGGGAAAAGGACAGTATTCACTGTAgagttatggaaaaaaaaaatatatatatatatataaaattgacACAAAGCAGCAACACACACAAGTAGTAAAGCATAATAACCCCACATGCCACGGTCATGCTGCTGGCATCCATAGCCGCTTCATTGTGTCAGTGCCCTCTATTATTGCTGATATCAGTGCAGATACTGATGCTGTACCAGTATTAAAGATGCTACAAATATCGATATGACGATGTATTATTGGTACATCCCATcaaatatcgatattttttTTGAAACATAGGCATAAACTACACTCTCTAATTTAAGACTTAAAGCCTAAAAGTACTAAagtgcttcattactccatgtgATGCCACTAATCAGAATAAAGAGGTGCATAATAAAGGTGATACCAATACTGTGCGTAAGTGCCAGTATCATACAAATACAGATACTGTGTCAGTAGTACAGGCTGGACAGAATATTGATATAGCGATGTATCTTTTGTATGTTTTGGGATACATTATACGATACGTTCCAtcaaatgtcagtttttttttgtttttttactgaaatgtaGACAGGATAAGCTTTCTAAAACTCATGGCCCCATTCATCTTAAAGCCTGGATGTATTGCTTTCTTTATTGCTTTATGGTGGCACTAATCAAATGAAGAGGGTAAAGCTGAGGTGAAGGATATTGGTTttgaaattctgtgaaactgacactgataataaatctataaaattattgtatttgattatttaggagtattttatacTCTTCAGTATGCAGTATGCAAAGATGCTTTGAAGTATCATCGAGAATTGTCTTAAAATAcaataacgtttttttttcctcattcaaGTGTCTGAGATTACACTGAGATTACCCACTACAGGTACATCACGTACCCTACCCCAGCTCACACAGCTCCGCATGCTGTTTACttaccaccacccccccccccctcctccctctctcttttcctgaTCAAGAGCCTGTTTAATCAGGGAACAGCTCCCATACGATGATGAATCGAGGGCCCCAACCAGAAAAGAAACTGGCACATGCCAGAGCTCCGTCTGCGGAGAACGTGCTCCAGAGCCCCGCATGATCGcaattaaaactatttttaatgctGTGCTGGTTTTCTGAGCCGGAGCGCCTAGTTAGGAATGCAGCCTCACCGTGGAGGAGTCTTTATTATGCACTGTTACTCATAGACTTTATTTGCTTTGACAAGATTTTATTTTGTGGGCCGAGTTCAAAGCGCCCTCTCCGGCTCTCCGCCTTCCCTCACTCATAATcctgctccaaaaaaggaagagaaatATGCAGACGTTATTTTCGCCTGGCAGCATGAATCAGAAAGAGGGGGACAAAAAGGCCAACTGATGGAGTTAACCCTTCGCAAGGTGCTTCTAAGAAAGCTCAAAATCCACGTTGTAGAAACAGCGAGGGACTTTCAGCATGAGTGAACGCAGGAATGTAGCTGTGGGAACCAGAATCAATAAGCAGCAGCTCCAACATGGCAGACCTTTGCTTACTTTACTCAGTTTAAGGAATGAGTGAAGTACATGTAATCTAGAAACAGAAACATCAGGAGAACTTTAAATTCTTTTTCAGACATAGCTGTAAATTTCTCTCACATATCTTCTctattgtatgtatgttttactaaaaaaagactGTTATTATATTCAGCTTTCAATTGGtggtttaacaaaaaaaaaaaaaaaaaaacaggcatctGTGCAAATGTTACATTCAGAGActgtttacctgtaataaactctatataacattagaataaacccaaataaacataaagtcagtgatcagtgagagcgtttacctgtaataaactctatataacattagaataaacccaaataaacataaagtcagtgatcagtgagagagtttacctgtaataaactctatagagcattagaataaacccaaataaacatttatctGTTTTCTATTGGAGAGTTTTAAACATTACAATTCTTATATTAGAGTATTCTGTTGTAATATTTAAGGTTTAGACATTTGTACATGTTTTAAGTACACAAAAGGACTGAAGATTTGCACAAAGTATCTAAATATaatttgaaatgttttacagaagTCCAAAAACACTAGATTGTTTAGGTTAGGGTTTCATATTTTGCAGTgcataaaactatataaagtgcACCTAAACTATGAAATACAGTAGTACAGCCTGTATCCCCAGCTAACCCTGCGTTTACTCGTTCTTAAAGTCTCTAATCATTATGAATAAGCCTTCTGTATAGTGTTAACAGTGCAGTGTAGTGTTCAGTTCTCTACAGAAGCTCCAGACTCGTGGATATTTGTACATGTGGTGGAAACAGATGTCTTGAAGGACGAAAAAAGGGCTACGGACTTCTGTGGTCATCAAAGTATTTCTGGAGCTTCGTACCGGCTGGTTCCACATTACaccatcatcttcatcttcatcatcatcatggttTTGTGTGTCAGTCTTAAGCCTGAAACAGACCTTCGTTCTGTCTCAGGTTTATGGCTTTTTAACTGATGTGTAGTCCATTAACTATTCATCACTGCATTCACGCTAAAGCTCTCAGAAGCCCTAACTCTCGCTCACAGAAGTACTTTCACAAACACAGAAGTCCAGACACATGTGGGGGAGGTGTTGGAGGACTGAAATGAATGGTGGCAGAGTTAATTCATCAGGCATATAAATCTGTGCAGTGGCATACATTTAGACAACAGGCAGATGAATGACGTTCTGAGTGGTGGAAATAAATCGAAATAGCTTGACGTTGCATAGAGTTAAAGGAAGTTTAAGCTTTTAATTATGGTCAAAGCAATCCTTCACATTGTTTTGTCCTCTATATACTACTGTATTATGGGTTTGCAGTGCAAATGTAGTAAATGCTAAATCATGTTCACacgatacagctctgaaaaacaataagagaccactttaagaaaagttaagtttctttgatttcaccaaaatctctgaaatataatcaggaggaagatggatgatcacaaaccattaaactaagctgaactgctt
>TU37416
taaaaaaacctatggaacctataacctataaaaaccaaataaaaacctatggaatataatcaagaggaagatgatcacaagccatcaaatcaagctgaactgaatttgtgcaccaggagtggcataacgttatccaaaagcaatgtgtaagactgatggaggagaacataccaagatgcatgaaaactgtgattaaaaaccagggttattccatcaaattttgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcaaataaatgctctaaatgacaaaatcagagcaaaatctgagaaactgattttagaaactgaagtggtttcatatttttttccagagctgtatagtacaGAAACCATTTTGGTTCTATATTGAGTGTTTTCTCTCTAAATAACTCTATGCAAGATGTTTCTGTCACGACAAaaagaacaaattaaaaatacccAAACAATTTAGGCTTTGATGTATCAAAGGATTATTCCCTTAAGTTGCCATGAATCAAAATAGAACCATGACACTTACTTAAGGAACTCTTAAAGAACCTATGAAGAGCTCCACCTTTTAAAGAGTGTGTAAATAGGTAACAAAACATTTAAGCATCCAAAGGGTCCTTTGCTTTGCTAGATACTATATGGTGTGCACCAGATAGTATGTGGTAAGCACTATATACTATCAGGTGTACACTAGATTGTATGTGGTAAACGCAATATACTATCAGGTGTGCACCAGATAATATGCggtaagcaccagatactatcGGGTGCACACTAGACTGCATACAGCATAATACTATGAGACGTACGCCTGATACTGTCAGGTGCACACCAGATACTATTAGGTGCACActagatacagtatatgtgtataACACCAGACACAGTAAAGTGCACAGTTGGCATTATCCAGGTAAGCACCAAATACTATCAGGTGTGCACTGGACACTATTTGATGAGCAACTTATGCCATCATATGCACAGTATATACTATGTGGTATGCACCAAATACGATCAGGTTGCAATATATTTAGGAAGTATGCTGTATGCAGCAGATACTACCAGGTGAGCACTAGTTATTAAGCATTGAGCACCAGATAATATGTGGTAAGCACCAAATACTCTAAGGTGTGCACTTAAGATACCACACAGTGAGCACTGGATAGTATGTGATTAGCATCAGATACTGTTAGGTGCACACTAGATCCTGTCAGGTGCACACTAGAAAATATGTGTTAAGGACCAAATACTCAAATAATCAGGTGCACACTTCATACTACGAGGTCGGAACTTGATAGCATCAGCTGAGCACCAGATACAATGTGGTGAACAACTGATAATATCAGGTGAGCAATAGATAGACAGACTaataggataaaaaaaacactgttcactGGGCTTCAGTGTATCTAGTGAGCACCTGATAGTATCTGGTGTGCACCTAACAGTATCGGGCATACATCTCATAGTATTAAATGACTTATTATAGTACTGAACAATCTACGCTCACTGCACACAGGTTAAAAACAGTGTGTGGTGATTTACGTAGTTAGCTTCAAGCTAACTGGCATGGGCGGATCTACCGGGGTAGCATAGGGTGGCAACTGCCACCCTAAATGAAAGCCTTGCCACCCCTACTGCCACCCCAGAATTAAGTGCTAGTATACTGTAGTTGCAGTGCTGATTTTGAGCTtataaaaatcttattttgcAACTCTAACATGTATTGTTTGCTAGGTCCAATGATGTCAGTTGCTTAGTATATACATCTGCCGTATGTTGCCACCCCTCAAAAATTCCTGCACCCCTCTTGCCAccccataaatatttttttctagaccCGCCCCTGCTAATTGGTGAATTATAAAACCCtttacactaccgttcaaaagtttggggtcacattgaaacgtccttatttttgaaggaaaagcactgtacttttcaatgaagataactttaaacta
>TU37417
ctctctctctctctctctctctctctctctgtctctctctctctctctcttactcacacacactgatacatgtAGTTTTTCCTTCCAATACTAATACAGAGTACAGATAACAATAGattttttagagattttttactcatatctgctgataccagTACAGATAATGATACAAGCTTTTACTTAACTCTTCAATAGGTGCCTATAAATCATGATGTTCATtgcgttactttttttttttacaggttttatttcagtaaaggCAGTGTTCTGCATCCCAAATGAGATATAATAAGGGAAAAGGACAGTATTCACTGTAgagttatggaaaaaaaaaatatatatatatatataaaattgacACAAAGCAGCAACACACACAAGTAGTAAAGCATAATAACCCCACATGCCACGGTCATGCTGCTGGCATCCATAGCCGCTTCATTGTGTCAGTGCCCTCTATTATTGCTGATATCAGTGCAGATACTGATGCTGTACCAGTATTAAAGATGCTACAAATATCGATATGACGATGTATTATTGGTACATCCCATcaaatatcgatattttttTTGAAACATAGGCATAAACTACACTCTCTAATTTAAGACTTAAAGCCTAAAAGTACTAAagtgcttcattactccatgtgATGCCACTAATCAGAATAAAGAGGTGCATAATAAAGGTGATACCAATACTGTGCGTAAGTGCCAGTATCATACAAATACAGATACTGTGTCAGTAGTACAGGCTGGACAGAATATTGATATAGCGATGTATCTTTTGTATGTTTTGGGATACATTATACGATACGTTCCAtcaaatgtcagtttttttttgtttttttactgaaatgtaGACAGGATAAGCTTTCTAAAACTCATGGCCCCATTCATCTTAAAGCCTGGATGTATTGCTTTCTTTATTGCTTTATGGTGGCACTAATCAAATGAAGAGGGTAAAGCTGAGGTGAAGGATATTGGTTttgaaattctgtgaaactgacactgataataaatctataaaattattgtatttgattatttaggagtattttatacTCTTCAGTATGCAGTATGCAAAGATGCTTTGAAGTATCATCGAGAATTGTCTTAAAATAcaataacgtttttttttcctcattcaaGTGTCTGAGATTACACTGAGATTACCCACTACAGGTACATCACGTACCCTACCCCAGCTCACACAGCTCCGCATGCTGTTTACttaccaccacccccccccccctcctccctctctcttttcctgaTCAAGAGCCTGTTTAATCAGGGAACAGCTCCCATACGATGATGAATCGAGGGCCCCAACCAGAAAAGAAACTGGCACATGCCAGAGCTCCGTCTGCGGAGAACGTGCTCCAGAGCCCCGCATGATCGcaattaaaactatttttaatgctGTGCTGGTTTTCTGAGCCGGAGCGCCTAGTTAGGAATGCAGCCTCACCGTGGAGGAGTCTTTATTATGCACTGTTACTCATAGACTTTATTTGCTTTGACAAGATTTTATTTTGTGGGCCGAGTTCAAAGCGCCCTCTCCGGCTCTCCGCCTTCCCTCACTCATAATcctgctccaaaaaaggaagagaaatATGCAGACGTTATTTTCGCCTGGCAGCATGAATCAGAAAGAGGGGGACAAAAAGGCCAACTGATGGAGTTAACCCTTCGCAAGGTGCTTCTAAGAAAGCTCAAAATCCACGTTGTAGAAACAGCGAGGGACTTTCAGCATGAGTGAACGCAGGAATGTAGCTGTGGGAACCAGAATCAATAAGCAGCAGCTCCAACATGGCAGACCTTTGCTTACTTTACTCAGTTTAAGGAATGAGTGAAGTACATGTAATCTAGAAACAGAAACATCAGGAGAACTTTAAATTCTTTTTCAGACATAGCTGTAAATTTCTCTCACATATCTTCTctattgtatgtatgttttactaaaaaaagactGTTATTATATTCAGCTTTCAATTGGtggtttaacaaaaaaaaaaaaaaaaaaacaggcatctGTGCAAATGTTACATTCAGAGActgtttacctgtaataaactctatataacattagaataaacctaaataaacataaagtcagtgatcagtgagagagtttacctgtaataaactctatataacattagaataaacccaaataaacataaagtcagtgatcagtgagagcgtttacctgtaataaactctatataacattagaataaacccaaataaacataaagtcagtgatcagtgagagagtttacctgtaataaactctatagagcattagaataaacccaaataaacatttatctGTTTTCTATTGGAGAGTTTTAAACATTACAATTCTTATATTAGAGTATTCTGTTGTAATATTTAAGGTTTAGACATTTGTACATGTTTTAAGTACACAAAAGGACTGAAGATTTGCACAAAGTATCTAAATATaatttgaaatgttttacagaagTCCAAAAACACTAGATTGTTTAGGTTAGGGTTTCATATTTTGCAGTgcataaaactatataaagtgcACCTAAACTATGAAATACAGTAGTACAGCCTGTATCCCCAGCTAACCCTGCGTTTACTCGTTCTTAAAGTCTCTAATCATTATGAATAAGCCTTCTGTATAGTGTTAACAGTGCAGTGTAGTGTTCAGTTCTCTACAGAAGCTCCAGACTCGTGGATATTTGTACATGTGGTGGAAACAGATGTCTTGAAGGACGAAAAAAGGGCTACGGACTTCTGTGGTCATCAAAGTATTTCTGGAGCTTCGTACCGGCTGGTTCCACATTACaccatcatcttcatcttcatcatcatcatggttTTGTGTGTCAGTCTTAAGCCTGAAACAGACCTTCGTTCTGTCTCAGGTTTATGGCTTTTTAACTGATGTGTAGTCCATTAACTATTCATCACTGCATTCACGCTAAAGCTCTCAGAAGCCCTAACTCTCGCTCACAGAAGTACTTTCACAAACACAGAAGTCCAGACACATGTGGGGGAGGTGTTGGAGGACTGAAATGAATGGTGGCAGAGTTAATTCATCAGGCATATAAATCTGTGCAGTGGCATACATTTAGACAACAGGCAGATGAATGACGTTCTGAGTGGTGGAAATAAATCGAAATAGCTTGACGTTGCATAGAGTTAAAGGAAGTTTAAGCTTTTAATTATGGTCAAAGCAATCCTTCACATTGTTTTGTCCTCTATATACTACTGTATTATGGGTTTGCAGTGCAAATGTAGTAAATGCTAAATCATGTTCACacgatacagctctgaaaaacaataagagaccactttaagaaaagttaagtttctttgatttcaccaaaatctctgaaatataatcaggaggaagatggatgatcacaaaccattaaactaagctgaactgctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37411 False 3359 lncRNA 0.43 3 53329797 53359600
TU37416 False 1977 lncRNA 0.35 3 53327871 53362114
TU37417 True 3432 lncRNA 0.43 2 53329797 53359600

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5,LOC106571612 coding downstream 562027 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 610804 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 686287 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 773599 52525768 ~ 52554272 (-)
LOC111188512 NA coding downstream 836984 52484734 ~ 52490887 (-)
med23 med23 coding upstream 327253 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 800988 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 1105903 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1279901 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 1293290 54655404 ~ 54659026 (-)
G27883 NA non-coding downstream 1183 53307642 ~ 53326688 (-)
LOC111191924 NA non-coding downstream 103722 53222854 ~ 53224149 (-)
G27869 NA non-coding downstream 143222 53183929 ~ 53184649 (-)
G27862 NA non-coding downstream 235244 53091024 ~ 53092627 (-)
G27857 NA non-coding downstream 247631 53079808 ~ 53080240 (-)
G27906 NA non-coding upstream 95691 53457805 ~ 53529684 (-)
G27911 NA non-coding upstream 137770 53499884 ~ 53504832 (-)
G27918 NA non-coding upstream 172526 53534640 ~ 53534997 (-)
G27919 NA non-coding upstream 179747 53541861 ~ 53542276 (-)
G27920 NA non-coding upstream 199157 53561271 ~ 53561525 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 477965 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1005951 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2587437 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 2788199 50522899 ~ 50539672 (-)
G27400 NA other downstream 2796232 50481889 ~ 50531639 (-)
trnal-cag NA other upstream 259957 53622071 ~ 53622358 (-)
akap7 NA other upstream 380766 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 687681 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 1194774 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1903977 55266091 ~ 55314179 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G298906 flrt2,LOC108258011 non-coding NC_047613.1 CM018559.1 20754972 ~ 20888652 (-)