trnal-cag


Basic Information

Item Value
gene id trnal-cag
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53622071 ~ 53622358 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37491
cccacttctgacaagcTTTTCTTACCCATCATGCTCAGCTTTCAcacaaatgatttaatttagttGTTTTTCCAGCTAAAATCATGTGAATTAAGAGGTGCAATTTAGTTTTCTGGATATCAAGGAGAATAACTAAATTACACTTTAGATTTGTCACATTTAGgtattttaaacaaaacctTTTAACAAACTGAGACTACAGTTTAAATGGGCATTAT
>trnal-cag
GTCAGgatggccgagcggtctaaggcgctgcgtTCAGGTCGCAGTCTCCTCTGGAggcgtgggttcgaatcccacttctgaca

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37491 True 218 lncRNA 0.43 1 53622071 53622288
trnal-cag False 83 tRNA 0.61 1 53622276 53622358

Neighbor

gene id symbol gene type direction distance location
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 212002 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 856227 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 905004 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 980487 52640295 ~ 52641584 (-)
LOC103032373 meis2b,LOC103032373,LOC108413876,LOC107582109,LOC107664830,LOC107668148 coding downstream 1067799 52525768 ~ 52554272 (-)
med23 med23 coding upstream 67009 53689367 ~ 53715908 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 540744 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 845659 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 1019657 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 1033046 54655404 ~ 54659026 (-)
G27922 NA non-coding downstream 59051 53562599 ~ 53563020 (-)
G27920 NA non-coding downstream 60546 53561271 ~ 53561525 (-)
G27919 NA non-coding downstream 79795 53541861 ~ 53542276 (-)
G27918 NA non-coding downstream 87074 53534640 ~ 53534997 (-)
G27906 NA non-coding downstream 92387 53457805 ~ 53529684 (-)
G27947 NA non-coding upstream 17441 53639799 ~ 53640057 (-)
G27956 NA non-coding upstream 37518 53659876 ~ 53660137 (-)
G27958 NA non-coding upstream 39185 53661543 ~ 53661915 (-)
G27960 NA non-coding upstream 40456 53662814 ~ 53663152 (-)
G28074 NA non-coding upstream 170860 53793218 ~ 53838213 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 772165 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1300151 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 2881637 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 3082399 50522899 ~ 50539672 (-)
G27400 NA other downstream 3090432 50481889 ~ 50531639 (-)
akap7 NA other upstream 120522 53742880 ~ 53907412 (-)
LOC103040805 NA other upstream 427437 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 934530 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1643733 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1809723 55432081 ~ 55444669 (-)

Expression


Co-expression Network