G27964


Basic Information

Item Value
gene id G27964
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53687699 ~ 53689734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37511
caaaaaaacaacaaaaagaaaaccaaaaaataacataaaaaagtacAGCATTGAGCATTATACAAACTCAACTCTGAAGGCATGAACAGACAATCTGCTGTGTGTCTTCCTTCTTTCCATGTTTGCAGTTATTGGTAAAGACAGTCTCATATTTACACAGTTCAGGGACATATGCTAACTTTCAATAAATCCTCAAAAGCATGTAGAATAAAACTCAGAAAACACAAGAGAAACTGCCTGCTCACCAGGGATTATAAATCCACTTCAACAGCTTTACATCATCAGTCTCTTAAACATTTCTAGGAAAACTTTACTTTCAGCAATTCATAGATGAACTTACTAACCTGACCAGTCCTAATTGGAAGCTGTGCTAAAGCTCAGGATTTCTTTAACCGTGTTATTTTAAGGCAGAGGGGCAGTGCTGCTTCACCAGAGCAGCTAATAAAATCCAGCCTTCGATTTAAGGGCCCATATATggcatttgttttttgtatttatgaaCCAAAATCAAAAGTCAATTTGTACATGATCATTTCCTATCCCTTAATTAATCTCAGAGAACAGCCTGTTATTGTGACTGTGTCCACAGGACTGATTTATGAAATGACCTAAGATCAGATTGGATGCCCTATTTTATAGGCAGAATGGCTGGACATTTTATTACATCGACAAAATAGAAATAGTTTTAGCAGCTTAGTTCCTTTGAATGGTCTGTATgtagtaaatattaaaatgttaacagtgtttacacactgctttccaCTCTTATTTCAACGAGTGAGGAAAATTCTGGGCCCCTAAAAAGAGTGAATggctaaatatatacattttagtttGGAGTACCAAACATATTTCATAAACTACTATGATTGAGACATTCAGTATTTGAGAACTCTGTGTCCTTCATcgtttttatttgataattttattcataattattCAGTTAACCTGCTGCTTTCACTTCTGGCAGAATAATGTTCATATGTTACCAAAGAGCATGAGGGCTCTCCACTACTCGTGTTTCACAGCTAAGTGCTCCGTAATTTGTGACATTAGTTGTTCCATCTTTACAGTCCATATTAATTCGCTTTTTTACTACTCCATTCCGATTATGtccattaaatgtttttttatagctgTGGTAGTTGAGGCTGTACAAGCTTTACAGAATGCAGATTAATTTAGGAATGTAACAATTCAAAAATTTAGACTTGGGTTTATTGCAGCATTACagattttaaatacagtataaatatgtaGTAGTAACTAAAAATGTGCTGAGtgttaatacatatatacagctctctacagattttaccaaattgaaaagctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttgaatttttgcaccaggagtggcataaaattatccaaaggcagtgtgtaagactggtgggggagaacatgccaagatgcatgaaaatggattaaaaaacatatctccaaataattatttctgaactcttaaaactttatgaatatgagaaCTGCAATTTTTGTGTTAtatagccatttcttattttctgcaaaataatgctaaatgataatattttcatttggaatttgggagaaatgttgtccgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgatcaatTTGTATATCAACATTGTGTAAAGCCTGTCCAACCTCAGTAGctatgaaagaacacatttATGGGAGGAGCCTGTATAGATCAGACAACAACACAGTGAGGGTCCACCGGGGACATGGTCATTTGCAGAGTCACTGGACGGGTCCAGGTCCACTCTGAGGGGCAGGTGAGGAGACCATGGTTGGCTGGGAGGAGGAGGTTGCTGTAGCAACAGCTGCAGCTGGCTCCATCTTGCTGATAAAACGAAGGCGGAGCTTCATGGCCGGCCTTAATGTGCAGATAATCTTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37511 True 2005 lncRNA 0.36 2 53687699 53689734

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 858415 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 871205 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 898330 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 905835 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1077878 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 273828 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 577650 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 743989 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 975674 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1137890 54827624 ~ 54843995 (+)
G27962 NA non-coding upstream 12692 53674588 ~ 53675007 (+)
G27935 NA non-coding upstream 73692 53613777 ~ 53614007 (+)
G27923 NA non-coding upstream 110501 53576776 ~ 53577198 (+)
G27917 NA non-coding upstream 152474 53534600 ~ 53535225 (+)
G27903 NA non-coding upstream 183275 53499475 ~ 53504424 (+)
G27966 med23 non-coding downstream 1992 53691726 ~ 53693741 (+)
G27972 med23 non-coding downstream 6216 53695950 ~ 53696768 (+)
G27984 med23 non-coding downstream 24031 53713765 ~ 53715952 (+)
G27986 NA non-coding downstream 26740 53716474 ~ 53721884 (+)
G27989 NA non-coding downstream 34486 53724220 ~ 53724470 (+)
trnas-aga_8 NA other upstream 33969 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 34761 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 35110 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 35482 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 35671 53651947 ~ 53652028 (+)
G28072 NA other downstream 688507 54378241 ~ 54379306 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1690870 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 2543005 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 2601013 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 2647422 56337156 ~ 56453934 (+)

Expression


Co-expression Network