G27984 (med23)


Basic Information

Item Value
gene id G27984
gene name med23
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53713765 ~ 53715952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37538
AATCAACTCCACCGATGATTTTGCGAATGAGTTTAAAGGTCAAAGCCCAGAGTTGTGTGCGTTCCCACTCCAGAGAATCAGAGTTGATCAGAGCCTGGCAGACCATtCTGGGGGGCAGCAGACTGGTCTCCACCGCCATGGCCAAGCAGTCATAGAGGAAGGAGATGCGTTTTGGACTGTGCTGGCTGTGGATAAACCTCACGATCCACTGCACACACTGCTCATGGGACTCCTCAGGAAGACTGCTCCAGTATTGCCTGAATGCTCCTAAACAGCTGATAAGTTTGGTTCTTTCATCTTCAGGGGTGTCCATAAACATCCCAGCGAAAGCCTCCTCAATTACTTCTGTTTTCACCACGTCCTCAAAGATACTCTGCAGCTGACTCTCCATCGGGACCGCCATGGTTTAACCCTCACAGCGTGGAAAAAGCGCCGGAATATTTTACACTTAGTTTAATTTCTGCTTTAGATACATGATCAGCCGCTCCTCCTACAGCGGAGCCGCCGCGCAGCTTCAATAACAATCCCCCCTCCTGATCCTCCAGCAGCCCCAAACCAGGGTTCCGGATCCAGTAAA

Function

symbol description
med23 Acts upstream of or within circulatory system development; negative regulation of neurogenesis; and pigmentation. Predicted to be located in nucleus. Predicted to be part of mediator complex and transcription regulator complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human MED23 (mediator complex subunit 23).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37538 True 577 lncRNA 0.42 5 53713765 53715952

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 884481 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 897271 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 924396 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 931901 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1103944 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 247610 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 551432 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 717771 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 949456 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 1111672 54827624 ~ 54843995 (+)
G27972 med23 non-coding upstream 16997 53695950 ~ 53696768 (+)
G27966 med23 non-coding upstream 20024 53691726 ~ 53693741 (+)
G27964 NA non-coding upstream 24031 53687699 ~ 53689734 (+)
G27962 NA non-coding upstream 38758 53674588 ~ 53675007 (+)
G27935 NA non-coding upstream 99758 53613777 ~ 53614007 (+)
G27986 NA non-coding downstream 522 53716474 ~ 53721884 (+)
G27989 NA non-coding downstream 8268 53724220 ~ 53724470 (+)
LOC111191926 NA non-coding downstream 12206 53728158 ~ 53731983 (+)
G27996 NA non-coding downstream 27012 53742964 ~ 53867648 (+)
G28022 NA non-coding downstream 201841 53917793 ~ 53937355 (+)
trnas-aga_8 NA other upstream 60035 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 60827 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 61176 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 61548 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 61737 53651947 ~ 53652028 (+)
G28072 NA other downstream 662289 54378241 ~ 54379306 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1664652 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 2516787 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 2574795 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 2621204 56337156 ~ 56453934 (+)

Expression


Co-expression Network