G27996


Basic Information

Item Value
gene id G27996
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53742964 ~ 53867648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37560
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagacattctAGAGTGTATAAGTTGCTGGTATCGGAGAATGAGTGTATAGCTTTTGATATTGTTCCTAAGTGTTTCATTTACTGTATGACAGCCTTTATAAAGTCATTTAAGACCTACATAAGCCTACATTCATAACAACGGGTACTGGGTACAGTCCTACATCAAACACTCAAAGGCTTATTCTAACAAGTTTCAGATGTCAAAGCATGTTTAGAAGGGGGAAATGACATCACATGACAAAAGCACCCTATTTATAATTAAAGACATTGTTTGGAACCAGTTGTTATGAAGAAAGGCTTATGTAGGTGTTATATAGCCTGTGATATAAACACTCTCACTCATTCTTAGGCTGGTTAGACTTATATGTAAGAGTTTGGTTTACTGTGTGTTCGTGTGCTCTTAAGTTAGTTAGTTGtctatacagtgtgtgtatatctgtgaaAGTGCtgggtgtaaatgtgtgtgtcgATGAAGGTTTTGTCTGGTCACTATtatgagagaaagtgtgtgtgtgtttgtttgtgtgtgtgtgcacgcgttAATGAAACACTGTAGagtgtttaatttaatgtcTACAGTTTGTTGGTGTGTATATAACTCAGCAGTTCTCAAAAGGGTCCTAAAGGACCCCAGATGGTCCAAATTGTTttccaactcaactcaacataaatatagaaaatatggaACGTCTGGGGGTCCCTGAGGGCGTTTTTACACCTGAAGTTCGTTTCTAGGGTCCAGATCATTttcttggagcgttttctcactctgtttggtttggtttggtttcacacaggaataaacctaaacacaccaaaatgcgcaccaataaaccataaACTCGTGTGATTGGTCAGAGGTGTCTGGCGTGGgggcaagaaagtaaatatagcgagcaGATTCCGTGTTCCagcgtgtatatctgtgcagtgtgaagctgctttaacacagaacactgaaacgctgcacttttAAGCAGTCTTTTTAATTATATGTGCAGCGCAAATGCACATATTAAACGAGTAGTAAACGAAGTCGCACAGCTGCGagtagtgaacgcagcacactcagcgtgtgtaaacagcatggagcagcagagacagtgtttgttcatagctgtggtaataagCGTTATCTGCCTAACATATGAGATAAAACTGATATTAAAATCAGTTTAGTTCAAAttaaaggagtatatttgatagctgggtcggatcgaaaGCACAAGTGAACCAGTCCAGAGTTCTTTTTAGACTGGACTGAAACCACCTCCACTAGGTGGACCGCACTAAaggtacaaacaaaccagagtctgttcaaccagaccaaatagtgtcggtgtgaaaacgc
>TU37562
agagagagagagagagagagagagagagagagatactgaaccAGAGTGATCAGTttgctgaaatgtgtgtgtgaacagtttGTTGGTCTCTGACTGTGTAAATGAGTGTTAGTCAgtgttttgctgtgtgtgtgtgtgtgtgtgtgtgttagagtttggTTTGCTGCtggtcaggtgtgtgtgtgttcaggctgAGCTCTCGTGTGATGAGTGCCCGTACTGCTGGTTGCTCTAATAGTGTCTTAAAGTCCTTCACCCGCctctgaacacacactctctctgcctcCAGCATCCTCTCCAACAGATGTGTGTCACACACACGGCCTGCAgaacacaacaaacaaacaaaaacagacaaacaaacaaacaaacaaataaacaaacaaaatatagaaATGAACAATACAGCTATTCAGCACATCATGATCCTTAACACTGAAATTAGCATCAGCCATAAcaaatcacacactcacacacacacacacacaattacacactacacaacatcCTCTTATCTCAGCAAgtgaaaacagctcacatttGGGCTGTGTATCTAACATATCTCATCTCTGAggttacacacagagtaataGCAGATAATCTCAGTTTATTCTATTTGTTGCAGTGGCCAGTTGTAGTGTgtagtatctccaaaacagcaacatttCAAGAGAAGAAAAATCCTTCttaaatttcaataaaaatgaatgaaataaaatcttatgtcattttagaacatttctcatgATCCATTCATTAATAAATTCTGATTTAATATAAACTATGACTCAGTTTTAgtcaaaaagtgtttttat
>TU37563
agagagagagcgagagagagagagagagagagagagagagagatactgaaccAGAGTGATCAGTttgctgaaatgtgtgtgtgaacagtttGTTGGTCTCTGACTGTGTAAATGAGTGTTAGTCAgtgttttgctgtgtgtgtgtgtgtgtgtgtgtgttagagtttggTTTGCTGCtggtcaggtgtgtgtgtgttcaggctgAGCTCTCGTGTGATGAGTGCCCGTACTGCTGGTTGCTCTAATAGTGTCTTAAAGTCCTTCACCCGCctctgaacacacactctctctgcctcCAGCATCCTCTCCAACAGATGTGTGTCACACACACGGCCTGCAgaacacaacaaacaaacaaaaacagacaaacaaacaaacaaacaaataaacaaacaaaatatagaaATGAACAATACAGCTATTCAGCACATCATGATCCTTAACACTGAAATTAGCATCAGCCATAAcaaatcacacactcacacacacacacacacaattacacactacacaacatcCTCTTATCTCAGCAAgtgaaaacagctcacatttGGGCTGTGTATCTAACATATCTCATCTCTGAggttacacacagagtaataGCAGATAATCTCAGTTTATTCTATTTGTTGCAGTGGCCAGTTGTAGTGTgtagtatctccaaaacagcaacatttCAAGAGAAGAAAAATCCTTCttaaatttcaataaaaatgaatgaaataaaatcttatgtcattttagaacatttctcatgATCCATTCATTAATAAATTCTGATTTAATATAAACTATGACTCAGTTTTAgtcaaaaagtgtttttat
>TU37565
CCAATGTGCCCCGCGCCTACCCGAGAGAATGACTCATCCGTCCAGTCTCGGTTTTATATTCCACACACTACAGATTTCACAGAtttataaagttaaataaaatcctGAAGGATGGATCctgaaagagtgaaaaaagtAGCAGGAtggtttcattttttctttttcttttttatgcatCATTTATCGTCTGATGAAAAACAAAGTTTAACCCGAGCAAGTGAACAAGGAGTTCATttcagacaaaaacaaaacaaacttttttaGTTTAAGGATCTGGTGAACAGAGATATGcagcaataaaagaaacaaacaaaaaaataaaaataaaataaaatacaagtgaaaagaaaaaagtgtgatCATGTGGTGAATGAAGATGCGTCCATCTGATCGAATGGGATTAAGGCCACTTTGGAGTGGAGACACGAAGAAGcacaaagagttaaaaaaacaaacaaaaaaaaaaaactcagaattcATTAACTCAAACTCAACCAGCTAATATAGCTCATCATTCAGTCTGTTCCTGGATTCCTTTAAAAACTAATGTctctttaaatcaataaaaaaaagtcacatgaAGTCATATCAGAAATTAATTTGCGTCCTCCATGTCCAGTCTTTAATAATTAGACCTGGATCTTCATTACTAATAAATTAGAGACCAGTCgattctatatttatatttgtcttGAGCTGAAATCAGGAAAGCTCCAGCTAGGGCGGGACGAACACTTGTAGCCTCAACAGCTCACTGGGTAAGTCTggacacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37560 True 1385 lncRNA 0.49 2 53826330 53838206
TU37562 False 815 lncRNA 0.38 2 53803728 53839650
TU37563 False 825 lncRNA 0.39 2 53742964 53839650
TU37565 False 822 lncRNA 0.63 2 53836053 53867648

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 913680 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 926470 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 953595 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 961100 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1133143 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 95914 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 399736 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 566075 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 797760 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 959976 54827624 ~ 54843995 (+)
LOC111191926 NA non-coding upstream 10981 53728158 ~ 53731983 (+)
G27989 NA non-coding upstream 18494 53724220 ~ 53724470 (+)
G27986 NA non-coding upstream 21080 53716474 ~ 53721884 (+)
G27984 med23 non-coding upstream 27012 53713765 ~ 53715952 (+)
G27972 med23 non-coding upstream 46196 53695950 ~ 53696768 (+)
G28022 NA non-coding downstream 50145 53917793 ~ 53937355 (+)
G28049 NA non-coding downstream 162657 54030305 ~ 54031914 (+)
G28050 NA non-coding downstream 178452 54046100 ~ 54047682 (+)
G28068 NA non-coding downstream 416403 54284051 ~ 54301420 (+)
G28066 NA non-coding downstream 534232 54401880 ~ 54403855 (+)
trnas-aga_8 NA other upstream 89234 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 90026 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 90375 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 90747 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 90936 53651947 ~ 53652028 (+)
G28072 NA other downstream 510593 54378241 ~ 54379306 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1512956 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 2365091 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 2423099 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 2469508 56337156 ~ 56453934 (+)

Expression


Co-expression Network