G28022


Basic Information

Item Value
gene id G28022
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53917793 ~ 53937355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37593
GTTACGAACAGGGCAATCATCCAATCAGATTGGGATGTGTAGGCTTTGGTGAACGCGAGAGCCAGTCAGAGCGCGGGGGCGGGGTATTTCCTCGGGCTGGGAGAAGGCGGAGCgagttgtgtgagagtgtgagtgagtgtgcgtATCACTACGTTGGCTCTTCTCCCAGAAGCTTTTCTCGggctgggatttttttttcacgtttttgAATATTTCGGGAATTTCTTCAAGCGAAGTTTTTTGCTGAATTCGGCTGTAAAGGCAGCAGCAGtcaaacgagtactggatgttaatctacacagatttctctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37593 True 312 lncRNA 0.49 2 53917793 53937355

Neighbor

gene id symbol gene type direction distance location
LOC103041583 LOC108417958 coding upstream 1088509 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 1101299 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 1128424 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 1135929 52769242 ~ 52781864 (+)
LOC103032675 kcnk10a,LOC103032675,LOC108413877,LOC107664828,LOC107582110,LOC107740298,LOC107747370,LOC107668129,LOC105017581 coding upstream 1307972 52574938 ~ 52609821 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding downstream 26207 53963562 ~ 54049416 (+)
scara5 scara5,LOC104952888 coding downstream 330029 54267384 ~ 54399891 (+)
LOC103031746 NA coding downstream 496368 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 728053 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 890269 54827624 ~ 54843995 (+)
G27996 NA non-coding upstream 50145 53742964 ~ 53867648 (+)
LOC111191926 NA non-coding upstream 185810 53728158 ~ 53731983 (+)
G27989 NA non-coding upstream 193323 53724220 ~ 53724470 (+)
G27986 NA non-coding upstream 195909 53716474 ~ 53721884 (+)
G27984 med23 non-coding upstream 201841 53713765 ~ 53715952 (+)
G28049 NA non-coding downstream 92950 54030305 ~ 54031914 (+)
G28050 NA non-coding downstream 108745 54046100 ~ 54047682 (+)
G28068 NA non-coding downstream 346696 54284051 ~ 54301420 (+)
G28066 NA non-coding downstream 464525 54401880 ~ 54403855 (+)
G28146 NA non-coding downstream 482028 54419383 ~ 54420330 (+)
trnas-aga_8 NA other upstream 264063 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 264855 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 265204 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 265576 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 265765 53651947 ~ 53652028 (+)
G28072 NA other downstream 440886 54378241 ~ 54379306 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1443249 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 2295384 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 2353392 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 2399801 56337156 ~ 56453934 (+)

Expression


Co-expression Network