G28066


Basic Information

Item Value
gene id G28066
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54401880 ~ 54403855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37644
AGCAACAGTTTATTCTCACGCCTTGAACCTGCAACATTTACATAGCGATGGAGTTTATAAATAcgacagtgtgtgtggtggtgtgaaAGTGAGGTGgtttcaggtacatttctggcgtattgttGTTGTGGCAACCGAAAACACAAAAGTCatcctgattggtttatttccctttacgcccaaaacacacccaggattaattaagataatttagTACATttgttttgagctgcacaagacATACTTTCCCgatgttacgatagcaaagacacattgacatgCCCATGACAGAGCAACAAAGTGCATCTGATTATTGAGGCTTGTAATGTAAACTTAGCCAAAATGGTCTCATGCACATGACCATCTGATTAAATTCCTCATCTACCTTTAACCACTTTAAAGCTTTTATTCAAGTTTACTGCATGAAAAAGACCATTTGTTTTCTTGCCCATCTCTGCCTCCTGCAGAGTTTAATTCCAACTGCAGTGTTCTCCATCTGTGTCTAATATTCAGATGCTCCTTCAGTCTGGTTAACTGGGTCAGGTGTGCAGGATTAGGGCTGGAACTGAACACTGCAGGAGACCAGGATCTCCAGGAACAGCTTCTGGTTTACAGTACAATCTACCTTGAAGTGCTGTAAGGTAGTAAGGGCCAAGTATAAGGGTCAatggggtgaaatgggattggaccctAGTCTTTTTGGAGGCAAGATGCAAAAATGTATCAATTTGTGCTTATGTGCTGTTTTAGGGTCAGATTTgctcacattttacatttattttactaacaTTTATGAGTGCAAACCATCAAGTTAGCCAAATCCGATCTAAGCAACAAATTGGAACTGATTAATAAGGATTGTAATGTGAATTCAGCTAAAGTGGCTGAATGTGGTTTGAGGGATTGGATAACATTGTGAACACAGATGATACAAGTCATGTATATGCATGTTTAGTGGTGTTCCAACCCCTCAAGCCACCTTTGATGGGGTTTGAAGGAAAGAGGTTTGAGGAATTGGatcacagtgtgaacacaaaGGAGGTTTCCTTCATGAGTTTAAGAGATTGAATCACAAAGTATACAAGATACTCATCTCGGTGTGGGtgtgaaatgaaaatatatgCAGTGAATTAGAGCAATATATTAGATTTTGAGTGTGGATTAAGGTCTTAACTTGTATCTGAgtgtcagtgtgagtgtgtgggtgaagttttGCAGTAACTTGGCGTCTTCTCCTTAAGTGCCTGTTTCCACATCAGAGAATGATCATTTATCAGATGGTCCACCAAAGACAACATTCACGCTTCCAGTGGTGTgtttctctattctctctcacacacagccacCTACAGGGGAAAGATTCATTCTCTTTACTCTGGTTTAGAGAGTCATGTAGCTTTTATATCATTCCTTTTCATTGTTTTCTTAAAAAGTTTATCATATTGTACACTTAGATAATGATTTAAAGCAAGGGAACAGGTTCCTACTTCCTCATATTCCTCTAAATAAGCAGCTAAGCTCTGACACTTGAAGTTATTGTTGATTTAGTCCTGAATGTGTCTtaattgttttgtattattttcctCGCTTGACTGCAGAAAGATGATTTCATTGTTTCTAACATGCCAGAAGTATGTATTATAGTGCAAATCATATCTGATCTCTGTTCTTTGATGATGTAATGTTTGATGCTTTGACTGCAATACACTTGTCACAATTGTATACCATTGGAATACGAATCAGGAAATTGAAAGCCTTAACAAAAAAGCCTTTGAAGCTTTAGTAACTTTTTGAACCTTCGACTGCAATCCTTATTCATTTCTTATTAGTGTAAATAATGCTATAAATGTACCTGCACATGCTGTAAATTTCAGCAGCATTACACCACATTATCTCAGTGAACACACCTCGAATTAtggattttttaaagattttgtgtCTTTATATGAAGAGA

Function

NR:

description
PREDICTED: sodium/potassium/calcium exchanger 5

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0051216 cartilage development biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU37644 True 1954 lncRNA 0.33 2 54401880 54403855

Neighbor

gene id symbol gene type direction distance location
scara5 scara5,LOC104952888 coding upstream 1989 54267384 ~ 54399891 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding upstream 352464 53963562 ~ 54049416 (+)
LOC103041583 LOC108417958 coding upstream 1572596 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 1585386 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 1612511 52785659 ~ 52789369 (+)
LOC103031746 NA coding downstream 29868 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 261553 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 423769 54827624 ~ 54843995 (+)
igf2r igf2r coding downstream 441397 54845252 ~ 54880390 (+)
afdn afdn coding downstream 607727 55011582 ~ 55155449 (+)
G28068 NA non-coding upstream 100460 54284051 ~ 54301420 (+)
G28050 NA non-coding upstream 354198 54046100 ~ 54047682 (+)
G28049 NA non-coding upstream 369966 54030305 ~ 54031914 (+)
G28022 NA non-coding upstream 464525 53917793 ~ 53937355 (+)
G27996 NA non-coding upstream 534232 53742964 ~ 53867648 (+)
G28146 NA non-coding downstream 15528 54419383 ~ 54420330 (+)
G28164 NA non-coding downstream 120160 54524015 ~ 54524290 (+)
G28193 NA non-coding downstream 125938 54529793 ~ 54533491 (+)
G28194 NA non-coding downstream 131074 54534929 ~ 54537760 (+)
G28196 NA non-coding downstream 133913 54537768 ~ 54538463 (+)
G28072 NA other upstream 22574 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 748150 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 748942 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 749291 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 749663 53652135 ~ 53652217 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 976749 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 1828884 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 1886892 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 1933301 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 2291989 56695844 ~ 56706092 (+)

Expression


Co-expression Network