Gene
RNA
| Item | Value |
|---|---|
| gene id | G59224 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 12432563 ~ 12433051 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67429 | False | 357 | lncRNA | 0.36 | 1 | 12432563 | 12432919 |
| TU67430 | True | 489 | lncRNA | 0.35 | 1 | 12432563 | 12433051 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_12304891_12322499 | NA | coding | downstream | 109639 | 12304689 ~ 12322924 (-) |
| CI01000009_12176488_12184112 | OBSL1 | coding | downstream | 246903 | 12176154 ~ 12185660 (-) |
| CI01000009_12167744_12175422 | NA | coding | downstream | 257141 | 12167744 ~ 12175422 (-) |
| CI01000009_12152712_12167719 | OBSL1B | coding | downstream | 264844 | 12152465 ~ 12167719 (-) |
| CI01000009_12007202_12021667 | MFSD6 | coding | downstream | 410526 | 12006768 ~ 12022037 (-) |
| CI01000009_12486758_12498650 | CALCRLA, CALCRL | coding | upstream | 52575 | 12485626 ~ 12498650 (-) |
| CI01000009_12531562_12540003 | NA | coding | upstream | 98074 | 12531125 ~ 12540373 (-) |
| CI01000009_12643324_12643737 | NA | coding | upstream | 210210 | 12643261 ~ 12643988 (-) |
| CI01000009_12659018_12693857 | COL5A2 | coding | upstream | 225312 | 12658363 ~ 12694684 (-) |
| CI01000009_12711691_12713525 | FKBP7 | coding | upstream | 278530 | 12711581 ~ 12713525 (-) |
| G59220 | NA | non-coding | downstream | 4199 | 12428137 ~ 12428364 (-) |
| G59213 | NA | non-coding | downstream | 21421 | 12410917 ~ 12411142 (-) |
| G59209 | NA | non-coding | downstream | 25460 | 12406796 ~ 12407103 (-) |
| G59206 | NA | non-coding | downstream | 30642 | 12401604 ~ 12401921 (-) |
| G59200 | NA | non-coding | downstream | 39031 | 12393247 ~ 12393532 (-) |
| G59230 | NA | non-coding | upstream | 13908 | 12446959 ~ 12447178 (-) |
| G59245 | NA | non-coding | upstream | 36985 | 12470036 ~ 12470265 (-) |
| G59255 | NA | non-coding | upstream | 108487 | 12541538 ~ 12542357 (-) |
| G59295 | NA | non-coding | upstream | 161680 | 12594731 ~ 12597373 (-) |
| G59300 | NA | non-coding | upstream | 186338 | 12619389 ~ 12619594 (-) |
| G59097 | NA | other | downstream | 143045 | 12288217 ~ 12289518 (-) |
| CI01000009_08858198_08860555 | NA | other | downstream | 3572000 | 8856310 ~ 8860563 (-) |
| G55814 | NA | other | downstream | 4004551 | 8425821 ~ 8428012 (-) |
| G53515 | NA | other | downstream | 6927315 | 5502395 ~ 5505248 (-) |
| G52828 | NA | other | downstream | 8201094 | 4217420 ~ 4231469 (-) |
| CI01000009_13975122_13976026 | NA | other | upstream | 1542337 | 13975099 ~ 13978614 (-) |
| G59490 | NA | other | upstream | 1600513 | 14033564 ~ 14037873 (-) |
| G59811 | NA | other | upstream | 2429346 | 14862397 ~ 14887464 (-) |
| G59941 | NA | other | upstream | 2699053 | 15132104 ~ 15132503 (-) |
| CI01000009_15318811_15390382 | TNS1 | other | upstream | 2943209 | 15318811 ~ 15390382 (-) |
