G28068


Basic Information

Item Value
gene id G28068
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54284051 ~ 54301420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37646
TTGGATTGAAGaacgctgtgactgtcgccaaacactgctctccgctggtggagttcctgatagtcaagtgcagacctttttatttagtatgggagttctccgccgtgctaatagctgctgtctacatcccacccagcgctagcattggtgctaatgctaaagaggctctgtgtgaactctatcggtctatcagcgatctgcagaacaaacacccagacggactgtttattatcgccggagatttcaaccacgcaaatctcaagtcagtgctccctaaattccaccaacatgtgaactttgcaacgagaggagcgagcgcgttggatcttgtttacacaaacatccccagcgcgtaccgggcagagccccgcccccacctcgctttctcggatcacatgtgtgtttggctgacaccaacatacacaccactcatcagacgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37646 True 441 lncRNA 0.51 2 54284051 54301420

Neighbor

gene id symbol gene type direction distance location
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding upstream 234635 53963562 ~ 54049416 (+)
LOC103041583 LOC108417958 coding upstream 1454767 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 1467557 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 1494682 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 1502187 52769242 ~ 52781864 (+)
LOC103031746 NA coding downstream 132303 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 363988 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 526204 54827624 ~ 54843995 (+)
igf2r igf2r coding downstream 543832 54845252 ~ 54880390 (+)
afdn afdn coding downstream 710162 55011582 ~ 55155449 (+)
G28050 NA non-coding upstream 236369 54046100 ~ 54047682 (+)
G28049 NA non-coding upstream 252137 54030305 ~ 54031914 (+)
G28022 NA non-coding upstream 346696 53917793 ~ 53937355 (+)
G27996 NA non-coding upstream 416403 53742964 ~ 53867648 (+)
LOC111191926 NA non-coding upstream 552068 53728158 ~ 53731983 (+)
G28066 NA non-coding downstream 100460 54401880 ~ 54403855 (+)
G28146 NA non-coding downstream 117963 54419383 ~ 54420330 (+)
G28164 NA non-coding downstream 222595 54524015 ~ 54524290 (+)
G28193 NA non-coding downstream 228373 54529793 ~ 54533491 (+)
G28194 NA non-coding downstream 233509 54534929 ~ 54537760 (+)
trnas-aga_8 NA other upstream 630321 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 631113 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 631462 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 631834 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 632023 53651947 ~ 53652028 (+)
G28072 NA other downstream 76821 54378241 ~ 54379306 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1079184 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 1931319 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 1989327 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 2035736 56337156 ~ 56453934 (+)

Expression


Co-expression Network