G28072


Basic Information

Item Value
gene id G28072
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54378241 ~ 54379306 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37650
cctttccctaaatggaccacctgcctcagattagatctgctcgttagtctgcagttaaaaacacctgcagtcatgacaccttggagggctgctggacgaaattagagtggcaagaaccatggctccaacaagagaaatgtctcttgaaacaaaagagaggattgtgactcttcacgcatggttgctaaagatgtgggctgttcacagtcagctgtatccaagatatggaccaaatacaaacagcatggaatggttgttaaagccaagcgtactggtagaccgagaaagacatcaaagcgtcaagacaagcaacttaaggccatttgtcttgaaaaccgaaaaagtacaactaaacagatgaagcataaatgggaagaagctggagccaatgtatgtgaccgaaccgtaagaaatcgcctaaaggaaatgggatttcaatacaggaaagctaaaagaaaaccatcattgacacctaaacataaaagaacaagactgcagtgggctaaggagaggccaATCATGGGActtgtggatgactggatgaaagttatcttcagtgatgagtcaagaatctgcattggacaaggtgatgatgctggaacttttgtttggtgccgttccagtgagatttatgaagaggcctgtctgaagaaaacaaccaaatttccacagtccttgatgatatggggctgcatgtcaggcaaaggcactggggagatgactgtggttaattcttctatcaatgcacaagtttacattgacattttggacagttttctcatcccttcaattgaacagatgtttggagataatgaaataattttccaagatgacaatgcatcgtgccatagggcaaaaacagtgaaggcattccttggagaaagacacattcagttgatgtcatggcctgcaaatagtctcaacccaattgaaaacctgtggtggaaattgaaaaaaatggtccacaagaaggctccgacctgcaaagctgatctggcaactgctatcaaagagagttggcaccaaattgatgcagaatactgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37650 True 1046 TUCP 0.29 2 54378241 54379306

Neighbor

gene id symbol gene type direction distance location
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding upstream 328825 53963562 ~ 54049416 (+)
LOC103041583 LOC108417958 coding upstream 1548957 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 1561747 52811053 ~ 52816494 (+)
LOC103033541 LOC108413844,LOC108417958 coding upstream 1588872 52785659 ~ 52789369 (+)
LOC111188745 NA coding upstream 1596377 52769242 ~ 52781864 (+)
LOC103031746 NA coding downstream 54417 54433723 ~ 54455524 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 286102 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 448318 54827624 ~ 54843995 (+)
igf2r igf2r coding downstream 465946 54845252 ~ 54880390 (+)
afdn afdn coding downstream 632276 55011582 ~ 55155449 (+)
G28068 NA non-coding upstream 76821 54284051 ~ 54301420 (+)
G28050 NA non-coding upstream 330559 54046100 ~ 54047682 (+)
G28049 NA non-coding upstream 346327 54030305 ~ 54031914 (+)
G28022 NA non-coding upstream 440886 53917793 ~ 53937355 (+)
G27996 NA non-coding upstream 510593 53742964 ~ 53867648 (+)
G28066 NA non-coding downstream 22574 54401880 ~ 54403855 (+)
G28146 NA non-coding downstream 40077 54419383 ~ 54420330 (+)
G28164 NA non-coding downstream 144709 54524015 ~ 54524290 (+)
G28193 NA non-coding downstream 150487 54529793 ~ 54533491 (+)
G28194 NA non-coding downstream 155623 54534929 ~ 54537760 (+)
trnas-aga_8 NA other upstream 724511 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 725303 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 725652 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 726024 53652135 ~ 53652217 (+)
trnas-uga_9 NA other upstream 726213 53651947 ~ 53652028 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 1001298 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 1853433 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 1911441 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 1957850 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 2316538 56695844 ~ 56706092 (+)

Expression


Co-expression Network