G28082


Basic Information

Item Value
gene id G28082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53830473 ~ 53833244 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37666
cttattaaaaataaaatacatctgtTTTCAGATTTGATCCATTACATTATGTACAGAACACAATTTGAAGTCTTATTAAAGACGAAAATCAAAGTGTTATTAAATGAATCCACTAATGTCTTTAAAACCTTTCCCATAATATTAATCATATATGttacaaattatattactgAAGGAATTTGTAGCATTGGTATATCagaagtttttatttgtttacaacacttcattctactataaaatcacTCTATAAACTTTTGGAACTTGTAAACTCCCAGCATTAAAGGACCTATGTTATGCAGATATGCATCTCTTGTGTGCTCAATAACTAAAGTCAGAAGAAAAGTGAGAGCAAAACCAATATCTCAAAACACGAAATCTCCctctggaccagagaaacgaaaaaaaaagaagaagctgctaaaaacagctaaataaaGGCAAGTTTGCATTTTGAATATTACGTTAATCAAGTCCTCAATTCAGTTTATGTTTTGGATAGACTAGCAGGCTAGCTAACAacatgtgctcagtagctatGGTAACATTAGATACTGTAGCTACCAAATAAAATGGAAATGTAACTTATTTCAGGActgttcagtatttatttactgaacTCTGCTCTGTGTGCTAGGCTAACGAGGCCGTTGTGGAagctaataattaataaaagttGGTGACTGACATAATCTAGGCTAGTAAGTAGCCTACCAGTACCCGTGCATAAACCTGTCAGCAGGACTGTGTTTAATCCCACACAGGCTGTAGTATATAGTAAGGTGTAATGTAGCAAGGATGTACaagttaaaaatatgtttttctttcctcCAGCATGTTTGGTAGTGTTGGTAGTGTCATGATATACTCAAAACATGCCTCAGTTTGCTAGTTAGTTACAAAATACTGCACATCCATCTCCCCTGCACTGAGCTGTTTCCTCAATCTCCAGCATGCGGACTAtgttacccagaatgcaccttcCCATGACATCACATGCTCACACATGATCACATGACTCTTCACACATCACCTCCAGGAAGCCAATCACCGGAATACTGAACGCATGCtctttgctgagtattgtttgtttatcctgatttacaacacatttcttttCCTTGTCTTTATTGCCTTGTTTACTGACCATTTTTTCTGTGTACTTCGCCCTTTGTTATTGATAACCCGTGTTTGAACCCTGGACTGTTACTCACTTCTGGTATGTTATTTCCTGTTGGCTCCTGTTTACCGATATTGACCCTCGTATCCTGACTACTCTTCGTAATACTCCTTTTTATATTAAACTCTCTTATttgcgtctgtgtgtgtctgtgatctGCCTCACCATGACAAATAAGAGTAGGATGGTTGTTAAATGAggttatgttaattttttttttactttatctttCCAGATAAAGCTAATTAAAAACAATGCTAATGACAGTGGTATGATGAAGCATCTAGG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37666 True 1465 lncRNA 0.36 2 53830473 53833244

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding downstream 114565 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 420404 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1064629 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 1113406 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1188889 52640295 ~ 52641584 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 329858 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 634773 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 808771 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 822160 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 861939 54695183 ~ 54732688 (-)
G27960 NA non-coding downstream 167321 53662814 ~ 53663152 (-)
G27958 NA non-coding downstream 168558 53661543 ~ 53661915 (-)
G27956 NA non-coding downstream 170336 53659876 ~ 53660137 (-)
G27947 NA non-coding downstream 190416 53639799 ~ 53640057 (-)
G27922 NA non-coding downstream 267453 53562599 ~ 53563020 (-)
G28075 NA non-coding upstream 32811 53866055 ~ 53943260 (-)
G28093 NA non-coding upstream 44874 53878118 ~ 53881179 (-)
G28098 NA non-coding upstream 57854 53891098 ~ 54247479 (-)
G28110 NA non-coding upstream 147225 53980469 ~ 54049399 (-)
G28133 NA non-coding upstream 400893 54234137 ~ 54234756 (-)
trnal-cag NA other downstream 208115 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 980567 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1508553 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 3090039 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 3290801 50522899 ~ 50539672 (-)
LOC103040805 NA other upstream 216551 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 723644 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1432847 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1598837 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 1666656 55499900 ~ 55501760 (-)

Expression


Co-expression Network