G28093


Basic Information

Item Value
gene id G28093
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53878118 ~ 53881179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37678
GTCTTGCTCTAGAAGTTTTTTAATCCTATTCATGCTTCCCTGCTCTAGAAGCTTTATCCTCTTGCCTTTGCTGCACTTCTCAGGATGCTTCATCCTCATACCCATGCTTCCCTGCTCTAGAAGCTTCATCTTCTTGCTCTTGCTGACCTGCACTAGAAGCTTCATTCTCCAACCTATCTTTGTCTGCACTAGAAGCTTCATTCTTATCTTCTCGCCCATGCTCTAAAAGCTTTGCCATCCTACCAGTATTGCCCTGCTCTAGAAGCATTGTCCTTCTACCCATGCTGTAGTACTCTAGAAAGTTACCTTTTTGCCCTTGCTCTCTTGTGATGGAATTGTCATCTTCTTGCCTTGGACACCATGCTCTAGAAGCTGCGTCCTCTTACCTATGCTACCCTCCACTAGATACCTCCATTCTCTTACCCATGCTGCCCTCCTTTATCCTCTTGCCCTTGCTGCCCTGTGCTAGAATGGTTATCCTCTCCATACTGCCCTACTCTAGAAGCTTCATTCTCTTACTCTTGCTGCCCTGCTCTAGAAGCTCCATTCTCCAACGTCCTCTTCCTCATGCTGCCCTGCTTTAAAAGTGTTCTGCTCCTACCTCTTGCAATTGCTGTCCTGTACTATAATTGTCATTCTCTTGCCTTGGGCACTATGCTCTAGACGCTGGGTCCTCTTATCTATGCTACGCTCCACTAGATGCCTCCATTCTCTTACCCATGCTGCCCTGCTATTGGagctttttcattttacttaTGCTGCTCTGCTCTATAAACTTTTACTCTTGTCCTTGCTGCCCTGTGTAAGGAATTATCATGTATCCTAGCTAGGATTTTCTGCTCTAGAAGCATTGCAAATGTAACTtgctgtagaaacttttttaATATGTGTACTTCTCCATATTGTCCTGCTCTTAAACCTGCTGTGGATCTTATGACTGCAGTCAAGTGGACAGCAGAGAGGAAGCGGCTTCTATCCGGATCATAATGACAGGTATTAGAGGCGGCAGACTTGCCTCCAGATCCAGAGCTGATTATCGATCACCCGTCAAACCACCTGGGGCCTGAGACCGTCGCTCTAAATGACAGAAGACGAAGAGTGACAGACACAACTGaaggatagaaagagaaagagaacatgaaTGAGTCATGACATGTCATTCCACTTCATAAAGATTACACCCACCTTCCCGAGCCACGTCTTTAAGGGATAATCCGGGTTGCAGGGGTGCAGGCTTCACATGTCAAGTCACAGCACAGCGTCCACTGATGTTTTGAATGATTTCAGACTTAGCATTTTTTAGTGAAGAAAAAGTAGCAGAGAAACTATGTTGAAATGTAGACTGTAAACTTCATTTCTTCCCACATTAGTATGTGTGAGCTGAAGCGAATAGATTTTATGGTCTGAATAAGATTAgtgtcaaaaagtaaaacattcaTTATTGTAATGTTTTGACATCAAATCAAAAGGGTTCAGATTGTAAAACCATTCCCAATGCAGTTGTCTAGTTTTCTTCCTTTAGAATCTTTTAGAATAACTTCATGAATGAGTCATGACATGTCATTCCACTTCATAAAGAAACCCACCTGCCCGAGCCCACCTGCCCGAGCCATAACCTCAAGATACAGGTTAGATATCTTAAAGGTACCAAAGAAGCTTGGATGTATATAATGCATGTATATAATGCAAAGAGCATGTATTCAaataacatttgtttttgtatggcaaaattatacagtatatacagtgtaCAAGCTCTGTTCTGATTAGTTGCCCTATATTAAGGCTCGCTCTCAACACATTGAGAATTAACTTAGAAGTTTATTACTGTGGTTTGAAGAATGTGAAATTTACGTAAATCTGTGTGGATGTAAGTTTCAATTTATAGACTGCGGTGTGAAC

Function

NR:

description
PREDICTED: solute carrier family 35 member E3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37678 True 1902 lncRNA 0.42 2 53878118 53881179

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding downstream 162210 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 468049 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1112274 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 1161051 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1236534 52640295 ~ 52641584 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 281923 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 586838 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 760836 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 774225 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 814004 54695183 ~ 54732688 (-)
G28074 NA non-coding downstream 39905 53793218 ~ 53838213 (-)
G28082 NA non-coding downstream 44874 53830473 ~ 53833244 (-)
G27960 NA non-coding downstream 214966 53662814 ~ 53663152 (-)
G27958 NA non-coding downstream 216203 53661543 ~ 53661915 (-)
G27956 NA non-coding downstream 217981 53659876 ~ 53660137 (-)
G28098 NA non-coding upstream 9919 53891098 ~ 54247479 (-)
G28110 NA non-coding upstream 99290 53980469 ~ 54049399 (-)
G28133 NA non-coding upstream 352958 54234137 ~ 54234756 (-)
G28134 NA non-coding upstream 353052 54234231 ~ 54238171 (-)
LOC103031114 NA non-coding upstream 377732 54258911 ~ 54265628 (-)
trnal-cag NA other downstream 255760 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1028212 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1556198 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 3137684 50725063 ~ 50740434 (-)
LOC103034285 NA other downstream 3338446 50522899 ~ 50539672 (-)
LOC103040805 NA other upstream 168616 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 675709 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1384912 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1550902 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 1618721 55499900 ~ 55501760 (-)

Expression


Co-expression Network