LOC103040805


Basic Information

Item Value
gene id LOC103040805
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54049795 ~ 54055697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37693
CCTGAAGAACGTTCCTGGCTGGTTCCTGTGTGGAGGAGTCTTCCTGCCGGTCACTctcctgcttctgctgctgattCTTCACCTGAACCGTAAACTACAGGAAGtgGAGGTGGAACTGTCTGAGGCTCCAGACCTGCGGGAGGCAGCACAGCAACTGCTCTTCaagcccaaacacacacacagtcacaaacacacccatgttcacagacacacacactggcacAGAGATGCTGAGAAGAAATCCGCCTTCAAGATGAGATGAACTCTATAGCATGGCAGATCAGCAGGACCAGGACTGGAcacctcagagagagagagagtacatgCATTTATATGGAGCATATCTGAACATATTTCAACACCAAGAACTCCTGAAGAGACTCTGAGCACATATGCAGCCAAACACTTGGCTCCCAGGTCTGCAGAGATGCTGGTATTGGTTTACAATAAGCATGGTCAGGACCTGAATACATTAACAGTAATGACCGTTTTGGACCATTTTTATGGATCCATAAATGAAGTTTTGACACATTGTAaagataattattattttcttaagtGATGCATTAAACATAAtgcaattacattacatactctcactgtaaaacacagtatttgCATCCAGAGAGAATCGATTGATAGCAGTGAACcttggtgggtagtcatgcCAGACTGTCACAAATTGACACGTCTTTACTGAAGAGTCTTGGCGTCTCTCGCATCACAcatccagaaggcctggtgtcatggtgtaaGATGCAATTTTGCATGATGCCAGATTAtgtttggtcttcattacagacgCTTTTGAGAGACCAAAATtacattaatgaggtcctgcattCAGTGGTtctcagtgttgggcacgttactttgaaaaagcaattagttatagttactagttactccactataaactaactagttaccagtaaaagtaactattgagTTACTTTTGTTACTCAccccagtaaaaaaaattacgaaagatattaaaattatgtaattactattattattagaaaattaacaaacgaaaataaactcaaaatgttgacaaaaatagaatctgatgaattttaaaaaataaaaacgaaaaaGAGAGTTGAGTGGTGCGGTGGTGGTGGGTGCGCGCAgttcttcAGTTGTCCACCGGGGTGGGTGGGACTTGAGAACACTGTCACACGCACACTTGCTCCTTTGTCTGTATccgcaaagttaaaaaaaaaaaataaataataataaaaaaagttaattgagtggccattatagttacagtcagaataattagttagattacttgttactgaaaaaagtaatagaaaaaagtagtaacattgtttaattccatgccgttactcccatcactggtggtccaaccttttctgaatgcacattCTGGTTAGCTCTTCCAAcagctcatccacatactgctgctatcCCAAGAGCTTgtcttgaagacacagatatgaTACTATACCAATGCCAGGAGCATCTCCAGACCCTCCtctgattaataatgtgtgtgATAAATGTTCATGATGCATGGGATGGACTATTgtaggacaccattaggaacatTTACATCTTCATGCAGAAATGTGTGGCCTGTTGCAATAAACATGTTGCACATGCGACACTTCAGATCCAAAAttacacattacattttttatgtattttgaaAAAGGATTCAGCttcttctacttttttttaaagggacaAAAAGGCCAATTTGTAAAACTGTATAGAAAcaatattttgttatgttgtggCAGCATGGTGAGATTTGGTCATAGTTTGCAAGGTCTGTATTATTATTCAGTTGAATACTGAACCCTCACATGGGGGGATTGACAGTATTGTGAGATCATGCAGGAGGGAAGTTGCATACTTATCTGTCTTTTACTGCTTacgataaatcatattttatcatTTGAGTAAAAAATCTCTCGTTCTTGTGAGCCTG
>XR_002648645.1
CTGAGTGAGTGATTAACCTGAAGAACGTTCCTGGCTGGTTCCTGTGTGGAGGAGTCTTCCTGCCGGTCACTctcctgcttctgctgctgattCTTCACCTGAACCGTAAACTACAGGAAGtgGAGGTGGAACTGTCTGAGGCTCCAGACCTGCGGGAGGCAGCACAGCAACTGCTCTTCaagcccaaacacacacacagtcacaaacacacccatgttcacagacacacacactggcacAGAGATGCTGAGAAGAAATCCGCCTTCAAGATGAGATGAACTCTATAGCATGGCAGATCAGCAGGACCAGGACTGGAcacctcagagagagagagagtacatgCATTTATATGGAGCATATCTGAACATATTTCAACACCAAGAACTCCTGAAGAGACTCTGAGCACATATGCAGCCAAACACTTGGCTCCCAGGTCTGCAGAGATGCTGGTATTGGTTTACAATAAGCATGGTCAGGACCTGAATACATTAACAGTAATGACCGTTTTGGACCATTTTTATGGATCCATAAATGAAGTTTTGACACATTGTAaagataattattattttcttaagtGATGCATTAAACATAAtgcaattacattacatactctcactgtaaaacacagtatttgCATCCAGAGAGAATCGATTGATAGCAGTGAACcttggtgggtagtcatgcCAGACTGTCACAAATTGACACGTCTTTACTGAAGAGTCTTGGCGTCTCTCGCATCACAcatccagaaggcctggtgtcatggtgtaaGATGCAATTTTGCATGATGCCAGATTAtgtttggtcttcattacagacgCTTTTGAGAGACCAAAATtacattaatgaggtcctgcattCAGTGGTtctcagtgttgggcacgttactttgaaaaagcaattagttatagttactagttactccactataaactaactagttaccagtaaaagtaactattgagTTACTTTTGTTACTCAccccagtaaaaaaaattacgaaagatattaaaattatgtaattactattattattagaaaattaacaaacgaaaataaactcaaaatgttgacaaaaatagaatctgatgaattttaaaaaataaaaacgaaaaaGAGA

Function

GO:

id name namespace
GO:0016830 carbon-carbon lyase activity molecular_function
GO:0004611 phosphoenolpyruvate carboxykinase activity molecular_function
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU37693 True 1966 lncRNA 0.38 4 54049795 54055681
XR_002648645.1 False 1120 misc_RNA 0.40 2 54050761 54055697

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding downstream 333887 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 639726 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1283951 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 1332728 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1408211 52640295 ~ 52641584 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 107405 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 412320 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 586318 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 599707 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 639486 54695183 ~ 54732688 (-)
G28110 NA non-coding downstream 396 53980469 ~ 54049399 (-)
G28075 NA non-coding downstream 106535 53866055 ~ 53943260 (-)
G28093 NA non-coding downstream 168616 53878118 ~ 53881179 (-)
G28074 NA non-coding downstream 211582 53793218 ~ 53838213 (-)
G28082 NA non-coding downstream 216551 53830473 ~ 53833244 (-)
G28133 NA non-coding upstream 178440 54234137 ~ 54234756 (-)
G28134 NA non-coding upstream 178534 54234231 ~ 54238171 (-)
LOC103031114 NA non-coding upstream 203214 54258911 ~ 54265628 (-)
G28140 NA non-coding upstream 280152 54335849 ~ 54365033 (-)
G28145 NA non-coding upstream 345585 54401282 ~ 54403817 (-)
akap7 NA other downstream 142383 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 427437 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1199889 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1727875 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 3309361 50725063 ~ 50740434 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 501191 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1210394 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1376384 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 1444203 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 1547173 55602870 ~ 55606886 (-)

Expression


Co-expression Network