G28110


Basic Information

Item Value
gene id G28110
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 53980469 ~ 54049399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37696
ttttatttaaacagtgttACACAAAGAGGACAGGAGGTGATGgtaggtgggcggggccaaaaacacaattacacaattactCAAGCTGCTAAAAACGAAGGGGTGCGATTGGCGCCTCTGGTTAGCGGCAAATAGAAGGGGGGCTATTTAGAGAAATAAAAGCAAGAATACAAGAGAGatagtatgagagagagagcaagatagcACTGGTACCAGGCCAGAGAGGGAGGAGCTTCATTGATTTATCTACATGTACAATAATCCCACTGTGGCAAacccattttttcttttgcttttcatcaaaaaaaaaaaaaaaaaaagatcagaatatattaaaaatatttaaaaggggGGAAAACAAACCTAGATCATTCAAAAAAGGTCTAAAATGATCTGTTTACACACAAGACAGAATTCATTAAAATATCAGAGAAAATAATCTTTTGATTATTGGTATCAGAAATTTGTGTAGGAAaagcaaaatgtgttaaaaagctGCCCAGAattcttttttttttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37696 True 520 lncRNA 0.38 2 53980469 54049399

Neighbor

gene id symbol gene type direction distance location
med23 med23 coding downstream 264561 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 570400 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1214625 52760053 ~ 52765844 (-)
LOC107197707 c25h14orf132,LOC108413331,LOC107549545,LOC107582175 coding downstream 1263402 52670111 ~ 52717067 (-)
LOC103041285 LOC108413330 coding downstream 1338885 52640295 ~ 52641584 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding upstream 113703 54163102 ~ 54190321 (-)
tab2 tab2 coding upstream 418618 54468017 ~ 54524305 (-)
nus1 nus1,LOC107736830 coding upstream 592616 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 606005 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 645784 54695183 ~ 54732688 (-)
G28075 NA non-coding downstream 37209 53866055 ~ 53943260 (-)
G28093 NA non-coding downstream 99290 53878118 ~ 53881179 (-)
G28074 NA non-coding downstream 142256 53793218 ~ 53838213 (-)
G28082 NA non-coding downstream 147225 53830473 ~ 53833244 (-)
G27960 NA non-coding downstream 317317 53662814 ~ 53663152 (-)
G28133 NA non-coding upstream 184738 54234137 ~ 54234756 (-)
G28134 NA non-coding upstream 184832 54234231 ~ 54238171 (-)
LOC103031114 NA non-coding upstream 209512 54258911 ~ 54265628 (-)
G28140 NA non-coding upstream 286450 54335849 ~ 54365033 (-)
G28145 NA non-coding upstream 351883 54401282 ~ 54403817 (-)
akap7 NA other downstream 73057 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 358111 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1130563 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 1658549 52293880 ~ 52321920 (-)
pcmt1 pcmt1 other downstream 3240035 50725063 ~ 50740434 (-)
LOC103040805 NA other upstream 396 54049795 ~ 54055697 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 507489 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 1216692 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 1382682 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 1450501 55499900 ~ 55501760 (-)

Expression


Co-expression Network