G28194


Basic Information

Item Value
gene id G28194
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54534929 ~ 54537760 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37797
TGACCATGATAGCAAATTACATAGCTAGATGGTAGGCAgactaataatttatttattgtctctAATTAGGGCTTATTTGATTACACATTAAAGCTGTCTCATGGTacagtttttttacattggtGGATGATATtagaaacataataaaacagATCAGTTTAGCTAACAAGATAGCTACTCAGTGGGCTAATGCTTAATAAAAAGTCACAGTCAGGGCactgatatttaaaaacatgttggaAAGTTCCAGGTTAAAAGATCAGGTTAACTGACTAAATTAATTACTAAATTATTACTAAATAGGCTAATCCTTTACATTTCAATGTACATCTATGTATATTTTGCTTTACAGTGCAGTTTATTTTTAGTAGTTACCAGTTTATCCACAGTTAgttgaataaatatttttttcctgtgatCAATAATGTTTAGAACATACCAAAAGGGATCAGGTTAGCATAGTTAGCTAAGCATAGTTCTGATTTCAAAGCCCTTGAATGCAATGACAGGGAAACAATAGCGGAAACCATCATCTGAGCATGTGAAGGCAGCATTAGTAGCCAAAGACAGAAACCGTGGTAGGCACAAAGTCCCTTTAGAACTACAAGTCCCAATTGGCTTGTCCAACTAACGACATTCAGTTCCCAAAACCTACAGGACTGGTGCCTTCAGGGTAATGGAGTTCAGTGCATAATCACTGTGCCTACCATATCAGTGCCTATGTACAACTTTACATATAAAAGGCTGCTGGCAAGCACAGATGCCTACAAACGTACATtagagagaaaataataaagaaaactaCCTACGCAAAAGGGTCTAAAAAACTTTTCATTTAGTAAAACAGACCCCCAGCTCGACTGTAAATTAAGGCCCGAGACATATCTAAACGTTACTCtattcatgtatatatatacacgttagacaataataaatatgattgtaCAGAATTAATATACATGCCATTTTTACAGTCTATCATGTTAGATAACAATACAGCATActaaaaaaggaacaaaaaaacaaaacaatgttgTATTCAATGACTGCACCTCAGAATTGCAGTTTGCAGTCCAATTTAtaaattctgttattttatatatattttattattaaaaaccaaGACGAAAAAAATTTCAGTCGTAAGAAACGGCGTGATCTTCGCTGCTGGAAAGTGAGGCGTATTTGCACAGGTGAAAGCTTTCAggtagtatttttttctttttctttctttttttttgttgcataggaagagtgtgaaggttagCGTTCCACATAGGGATGCAAGCAGGAGACAAGGCgacaaaaaaaagacactaCACTGATCACCTCGCTTTGAGTTTACAGAAAGAGGCACCCAGCTCTGCTCCTCCCACACCTCAACCTGAATCCCCTCATTCTGAATCCGCTGCATCACCTTTAACTGGGTTTAGAAACATACTGTAGAAAAAGAAGTAGAGCCTCagaaacaggagagagagagagagagagagagagagagagagtgcaaaagtgagagaaagaagggaaagagagagagagggtaagagAGAATGCTGGTTTCTTCAGAAGAAACTCTCACTGTTTTTGGAAGGCTCTTCGTTTGGCCTGAATACCAAACGCACATTAACTAATACAAAAGGTGAGAAATGAGAGCAAATgaccagagaaaaagagattgaTGGCCTCTTAGGGCAGTACTGAGAGTCATTGCTGGGAACCAGGTCCACTTTGCAGTGTGCCAACAATAATTACAGGGAAACTCCACCAATTTTTCACAATTCCTTCCCTATTAAAtagatttgtgtttttaaaaatgccagaataaaaatgagaaacaatGCCAATACTCACTTTCCACAGTAGTGATACTACGCTGATATCTatagaacactgcactgacctgcaggttATGCATGTGGGGGCTCCTACACTGGATGTGGATGTGGCCGGTCACAATCACTAccccccactgcactgtccactatgTGTGGTAATGCATTCTGTGCTGTATTCCTGGCACACAAGTGGCATTGTGGATTATGAAATGTGGAattcatctggcacccactatcatgcCTTGCTTCAACTCCGATATTTCACATCACCTGGCTATGACCATGCCAGCTAGtgcaagataacacctcacaacttacagatACAGAAGTGGGCATTCCTAAACCATCCACTAAGGTAAAACtttatgatcagtttacatactgctattgCATTACATAATGCTTACCAGAGAGGATTCAGGCATTTTAGAAAACTCATTGccacttttaacttttactgtATTCAGTTCACATTGTAAACATAAAAAGTTCatgttaaagagttaaaaagcatttctattgctTTTAGTTGAAGCTAGTCTGAACTGTTATTGCTTATGTGCTACTCATTTTTTTGAGAGCCAGCAAAAGACTGGCAGTTATTGGAGATTTATTTTCAGTTGATATAATTGTTTGTAGTAGTTCATAGCATTGAAATTGGCAActgcagtaacaaaacaaaactactCAGATATCAAATATGAACAAAGTCTAAAATGTATTCTGTAACAACCACAGTAGAGAGGtacaaaaaaaaccttcagtTAATACTTGTAccacttttttttgtgtatcaCTAATTTACCACATCATAaatactgagttttttttttataaaataaatggccATATGTTGATTtgagtctgtattattttttgttataaatcatttcaataaaccattttaaattacttaaaaattgattttttaaaataaaataaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37797 True 2783 lncRNA 0.44 2 54534929 54537760

Neighbor

gene id symbol gene type direction distance location
LOC103031746 NA coding upstream 79405 54433723 ~ 54455524 (+)
scara5 scara5,LOC104952888 coding upstream 135038 54267384 ~ 54399891 (+)
epb41l2 epb41l2,LOC107560489,LOC106571359,LOC100380760 coding upstream 485513 53963562 ~ 54049416 (+)
LOC103041583 LOC108417958 coding upstream 1705645 52825184 ~ 52829284 (+)
LOC111188773 LOC108417958 coding upstream 1718435 52811053 ~ 52816494 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding downstream 127648 54665408 ~ 54689752 (+)
tdrd15 NA coding downstream 289864 54827624 ~ 54843995 (+)
igf2r igf2r coding downstream 307492 54845252 ~ 54880390 (+)
afdn afdn coding downstream 473822 55011582 ~ 55155449 (+)
LOC103024560 snx9,snx9b,LOC103024560,LOC108424479 coding downstream 728327 55266087 ~ 55296450 (+)
G28193 NA non-coding upstream 1438 54529793 ~ 54533491 (+)
G28164 NA non-coding upstream 10639 54524015 ~ 54524290 (+)
G28146 NA non-coding upstream 114599 54419383 ~ 54420330 (+)
G28066 NA non-coding upstream 131074 54401880 ~ 54403855 (+)
G28068 NA non-coding upstream 233509 54284051 ~ 54301420 (+)
G28196 NA non-coding downstream 8 54537768 ~ 54538463 (+)
G28197 NA non-coding downstream 57714 54595474 ~ 54643428 (+)
G28212 dcbld1 non-coding downstream 157435 54695195 ~ 54698365 (+)
G28300 NA non-coding downstream 624730 55162490 ~ 55162956 (+)
G28302 NA non-coding downstream 626034 55163794 ~ 55165019 (+)
G28072 NA other upstream 155623 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 881199 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 881991 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 882340 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 882712 53652135 ~ 53652217 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 842844 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 1694979 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 1752987 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 1799396 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 2158084 56695844 ~ 56706092 (+)

Expression


Co-expression Network