G57890


Basic Information

Item Value
gene id G57890
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12454786 ~ 12455080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65935
GTTGCTGTTCTGTTGGCGACTAACAACGAACACTTTGTATTTACTCTTGTGTACTGTACGTTCATTTTTTGTGCTTCCTTGTCGTTCGTTCATCAACTGCTCTTTATTTTTCGTGAAGCATTTTGTTGCGCATCAGCTGTGATAAACAGACATCCACTCGCATTGTGTGTGTAACAGTGGCCAGATAGTGAGAGTTTTGCTGTTAAACTACTGTACACTGACAACCGCTAGAGAATGCAGTGTTTAGCGTCATTGTTAATGCACTCGCCTCGCATGCCAGTGGCGATCGGGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65935 True 295 lncRNA 0.45 1 12454786 12455080

Neighbor

gene id symbol gene type direction distance location
CI01000009_12432736_12435509 NA coding upstream 18895 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 64121 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 88189 12351325 ~ 12366597 (+)
CI01000009_12249416_12290497 COL18A1 coding upstream 164188 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 232793 12196699 ~ 12221993 (+)
CI01000009_12504532_12504815 NA coding downstream 49300 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 191404 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 399113 12854193 ~ 12861031 (+)
CI01000009_13194613_13197758 NA coding downstream 739357 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 937226 13392306 ~ 13476807 (+)
G57871 NA non-coding upstream 53734 12400478 ~ 12401052 (+)
G57704 NA non-coding upstream 82612 12305639 ~ 12372174 (+)
G57733 NA non-coding upstream 104506 12326123 ~ 12350280 (+)
G57850 NA non-coding upstream 265966 12188545 ~ 12188820 (+)
G57896 NA non-coding downstream 7466 12462546 ~ 12462952 (+)
G57900 NA non-coding downstream 15202 12470282 ~ 12470604 (+)
G57903 NA non-coding downstream 18855 12473935 ~ 12474530 (+)
G57911 NA non-coding downstream 26664 12481744 ~ 12482032 (+)
G57756 NA non-coding downstream 73453 12528533 ~ 12594745 (+)
G57811 NA other upstream 519535 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 687842 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2598199 9853929 ~ 9856587 (+)
G56100 NA other upstream 3324500 9129300 ~ 9130286 (+)
G57682 NA other downstream 370389 12825469 ~ 12892339 (+)
G57691 NA other downstream 451364 12906444 ~ 12918465 (+)
G57701 NA other downstream 551563 13006643 ~ 13023138 (+)
G58028 NA other downstream 685298 13140378 ~ 13143608 (+)
G58382 NA other downstream 1578479 14039757 ~ 14039901 (+)

Expression


Co-expression Network