LOC111188920 (slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386)


Basic Information

Item Value
gene id LOC111188920
gene name slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54556888 ~ 54623840 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37835
GCCAGTGCAGCGCTGCTGCTCCCAGTATGAACACAGAGAGCTGAGACCAGAGCAGAGACCGACCGggctgcatctctctctctctctgtttctctgtgtctctctgtgtttgagTTACTGGTCGTCCTCCTGCTGTTTTTTCTCTCCGCATGATGGAAAGCTAGAGCTGGAGCTCTGAGATGCCCTTCAGCGCAGACATGATCTCCGAGCAGCACAATCATCATGTCGTTAGCACCATCGAGACGGTCCCCTCAGACACGGCCACTGCCTCCCCCACGCTCCTCACCCGGCTGAGGAAAGTCTTTAACAGAGAGCTCCTCCTCACTCTGGCTATGGGCCAGGTCCTGTCGCTGCTCATCTGCGGGATTGGCCTGACCAGCAAGTACTTGGCTACTGATTACCATGCCAACACTCCAGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTCCTGGTCTACACCACAACACTCGCAGTACGACAAGGTAACGC
>XM_022662815.1
CTGAAATTCAGCTCAGCTCGCTCCGGCAGTCAGAGCGAGCGGCCAGTGCAGCGCTGCTGCTCCCAGTATGAACACAGAGAGCTGAGACCAGAGCAGAGACCGACCGggctgcatctctctctctctctgtttctctgtgtctctctgtgtttgagTTACTGGTCGTCCTCCTGCTGTTTTTTCTCTCCGCATGATGGAAAGCTAGAGCTGGAGCTCTGAGATGCCCTTCAGCGCAGACATGATCTCCGAGCAGCACAATCATCATGTCGTTAGCACCATCGAGACGGTCCCCTCAGACACGGCCACTGCCTCCCCCACGCTCCTCACCCGGCTGAGGAAAGTCTTTAACAGAGAGCTCCTCCTCACTCTGGCTATGGGCCAGGTCCTGTCGCTGCTCATCTGCGGGATTGGCCTGACCAGCAAGTACTTGGCTACTGATTACCATGCCAACACTCCAGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTCCTGGTCTACACCACAACACTCGCAGTACGACAAGGTAACGCAGAGCTGCTTTTGGGTGACAGTGCAGATATTCACAGCAACTAAAACTGAtgacaaaca

Function

symbol description
slc35f1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1).

NR:

description
PREDICTED: solute carrier family 35 member F1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37835 False 493 TUCP 0.47 2 54556946 54623799
XM_022662815.1 True 592 mRNA 0.54 2 54556888 54623840

Neighbor

gene id symbol gene type direction distance location
tab2 tab2 coding downstream 32583 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 366567 54163102 ~ 54190321 (-)
med23 med23 coding downstream 840980 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 1146819 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1791044 52760053 ~ 52765844 (-)
nus1 nus1,LOC107736830 coding upstream 18175 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 31564 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 71343 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 148435 54772275 ~ 54781380 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 191938 54815778 ~ 54826525 (-)
G28221 NA non-coding downstream 23056 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 93928 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 153071 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 191855 54335849 ~ 54365033 (-)
LOC103031114 NA non-coding downstream 291260 54258911 ~ 54265628 (-)
G28231 gopc non-coding upstream 39879 54663719 ~ 54665970 (-)
G28262 igf2r non-coding upstream 226712 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 233870 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 243607 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 450161 55074001 ~ 55079665 (-)
LOC103040805 NA other downstream 501191 54049795 ~ 54055697 (-)
akap7 NA other downstream 649476 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 934530 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1706982 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 2234968 52293880 ~ 52321920 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 642251 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 808241 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 876060 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 979030 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 1010692 55634532 ~ 55641375 (-)

Expression


Co-expression Network