G28221


Basic Information

Item Value
gene id G28221
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54529768 ~ 54533832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37836
AAAGGTTTAAAATAATTACCGCTGACTATTGAAAACTGCCTTTTCCTCCACCATGATCAGGATGATTTCCGCTTTTGTTCCCTGTTATCAAGTcataattaaaaagtaattgcattaaggcatttttaaattaaaattagacTTAGCTAACTATGCTAACCAGATAcattttggtatgttttaaacattatggatcaaattatttaattaaataactgTATAAACTGGtaactactaaaataaaatgcattataaagtaaaatttacacGGATGTACAACGAAATGTAAAGGATTAGCCAATTTAATACTACCAGTATTTAGTCAGTTAACCTGGAACTTTCCACACAAGTAATTACAAATATGTGTTCCCttagctgaaaaaaaattagGCATTAGCCTACCTACTGTCTAGCTATattgttagcttagctaaacaatTCATGAATTATGCTTAGCTAACTATGCTAACCTGATTtgttttggtatgttttaaagattattgatcactgaaaaaatgatttaatcaaataaatgtgGAGAAACTACTAAAAATAAACTGCATTTGGAAATGATTAAGCTGTTTATactttagttagctaacctgAGCTGCTAATCTGgaactttacacactttacttAAATTATGTTATCAAATATTTGTGCCCTGACTGTGTGAGTGTAGTAGCTGAAAAAATGAGGCGTTAGCTTACATACTGACTAGCTATCTTGTAAGCTAAACTGATCTGTTCTGGCATGTTTTTAACAATCAAATAAGCCCTAATTTGTGACTGTAAATAAAGTATTAGCCTGCCTAACACCTACCACCTTCTCCTACATCCTTGAACAGTGTGTATTTAACCAAGAAATTAAAACGTTGCAGAAAATTCTCATTTGTAATTCTGACTTTTCGGTTGGAAACTCATGGTTAGCACCTGAAGGCAGCATATGTGTCCAGTAGTCAGCTTGTGATTCTGTCCTTTCAGCTAAAGCATTTCAGCATGTGGACAGTGCCTTTTTTAAACCAGACTCTGTTCAAATCGCCACCAAATGACAAGACTTTTGCACCGCGCTCTtttcttttgcctttttttttaccccgAACAGACTGGTATCATTATTCATTTATGGTTATTTTGTTTCTTCTGCATGTATTTTATAACTTACAGAGCATTAGGAATGCATAGAGCCTCCAAAGAGAGGCTCGGCATTCTCGTTTATGCTTcttcctcttatttttttttcgtttgGAAAATGTCTGTTTTTCCAAAAACACCATAGATTTTAAAGAGATGTACATAAGAAGTTCACTGAAACATATTGCTATGATAATTGTCTTTTAATGCACTGTTATTGCTGAAATATTTAGTGGTAAATGAAaagtatttaatgtttttatgtcttGTTTAGACACTAAAGATATGGCAGTTATATATGACAgctagatggcgctcttttaaGGAGTCTCTATGTAAATGTATAGAAATATAATGCCTCCCAGTTAACACATGCGTAGGCCTGCAccccatgtctctctctctctctctttctctctctctctctctctctctctctcccttttacAGAGATTGCGTGTTTGTCTTTTTCATGCACAAACTTCAGCACTTAAAAGCTCGCATTTGTGTCACTCTTGACCACTTGAGTGGTTGTCTCTGTCCTCTGCACTACACGCCAAAAATATGGAAGCACTTAATAAaggtattaaataaatatttcaatgtAATCATTTAGCCAAAAATCACCATTATATAGATTAACCAAAGacgttttattaaaatattctatTGCAGTAATGTAGCGCAgcttttattcacactctttattgattatattccccATCTTTTCAGATCTTAGGGTGCTTCTAAATGGGGATATGATTCAAGCTACACCATAGCTCGTCATATTATTGTctattaaattaaagaaagaaaaatgcatTTAGATTGTGTTGCTTCCAAATCTTAGGCCTGTAGTGTAGATCACAGCTCTCTCTGCTCACATCCTTAAACTCTTTCAGTGTGTTCTGTGCTGGACGAGCATGCTTTGAAAGCTGCCGTTGTGGTGGCATTCCTTAGACAGTCGTAGGCCGACTGCGAAGAGAGCGCAGAAGTGTTTGGACAGAGCCCACCCCTTGAACTCACTGTAGACTACATTTGTAAGCATTCAAGCAGACCAGACATGGCACCAACTCTGCTTGGAAACTCCCTCAGTTTCCCCTGTCCTCATCTCCGGAAACTGAGAGGTGGTTCCTATAAAAGTGGAGCTGATGGCGATGCTAGTTGTCTCTTCAGACCCTAAATTCTGATTGGACGAGCTAGTGGAGGTTCTCAGCACTCTGATTTCTTGCCTGAAGTTTCAGTTTATGAAGAATGTGCCCTCTCAGGCATTcttaacagagaaaaagaaaaacctggaatgcAATATATAAATTATGGGGAAATTTGAGAAAAGGTACCCTATTTTGTTGATCTTTCGGTGAGCCGTCAACCGAGCAACATGCAGTGTAATTTTGGGCAAGTAagcgtgtctttgctatcgtaacgtcggGAAAACTATGCCTCGCTGAGCTTATattgtgcaaaaggcatgtactcatccgtgtgttttttttgggtttaacGAGAAATAAACTATTCAGTGTGTCACTTCCCATTCCCTGCATAACAAGCAGAGATGTACGTGCTGCCAGGAAAGCAATGCAAAGGAAAAGGAAAGCAACCTTtaagtcagtggtgcacctgtgtttttcattgccaagatagcaatatgccagaaaatgtacctgaacacaccacaTGAAcaagaacaccacgcccattgATATATTCACAAGTCTTTACTATTTAAACTGTGcaggtgcaaggcatgaaaatagactgttggcagagtgtaaaatagcaatgaggATCATGACACGCCTTGCAAAAACATAGCATTCACTTCCCAGTGCATACAGTCTTTTCGAATCCAGTGGTTTTGTGATCTATCAAAATATAATTTGTGTATTGCATTCCATGCTTTCTTTATTACTGTTACACCGGCACAAAAAACTCTTCATACAGTTTGACACTTAaaacaatcatttaaaaatctgtattttcttCAAATATGCTCTTAACAAAGGTTTAAAGAGTGCCACAGAAGAACCACTTCTGGTTCATTAAGAGCTATGTTTGTAAAAAGAAGTTTGTGAGAGTGAGGAgccttttaaatgatctaaagAACTGGTCTTTAAACCTTCTTCTGGAGACCCAAATCTAACACACCACCCCTTCAGACAAAGGGCTTCTTGTGCTTAATACAGCACTCATTGGCTGGATCAGGTTAGGTGGAATAAAATTGGACCCAAAGTCTGTTAGAAGGTAGGTCTAGGTCTTCAGGAGCAGAGTTTGTGATCACTGATTTAAAGGTTATAATAAGGTTTGCGGTTTCTTTGTACAACCTACATATTGTATGAGGGTtctttacactttaaaaaggTTCTTCATTCTCACATCTTCGTTACAAAAAAGAACTATCAaccaaaatgtttttctttgtgaaCAAATGTGGTTCATCCATGGCCTCAAAGACCTGATTTTTGGCAGCTCTGTTTTTGGAGTGTAATGGGgcatattaaatgtttaatgttctGACCAAACCTGGACTTTGCTGATTTAAACCACAAACCCCAGAGTTCACATTGTGCTGAAGTGTTTTCAGACACTAGCTTTAAAGTTAAGAGCATTGATTTTCTAAGCCTCGAATCTTGCCCTTTATACGACTCTTGATGTTTGTCTACTAACATGCATCGACTACGTATTTTCCAGTGAGTGTACGTTCATGTGTGTGACCATGCAGACGCACTCTAAAGCTCTGAACTTGCCAGCAGATGCCTGCTGTTAGGATTGTTTCGTTCTGAAGTAGCTAAGGGAATAGCACAGCGCAGGCAAGCGACAAAAACTCATTTGTACTCTCTGGCTGCTTGTAGCTATATTGTCCTTTATTTCACTGTATAAATGACtgttaaatgagaaaaaagtcatgtatatttattttatatcctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37836 True 4065 lncRNA 0.39 1 54529768 54533832

Neighbor

gene id symbol gene type direction distance location
tab2 tab2 coding downstream 5463 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 339447 54163102 ~ 54190321 (-)
med23 med23 coding downstream 813860 53689367 ~ 53715908 (-)
LOC103035653 flrt2,LOC108444111,LOC107752686,LOC107706955,LOC107664820,LOC107570088,LOC107701229 coding downstream 1119699 53333965 ~ 53410069 (-)
glrx5 glrx5,LOC106571612 coding downstream 1763924 52760053 ~ 52765844 (-)
nus1 nus1,LOC107736830 coding upstream 108183 54642015 ~ 54652464 (-)
LOC103032288 LOC108424430 coding upstream 121572 54655404 ~ 54659026 (-)
dcbld1 NA coding upstream 161351 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 238443 54772275 ~ 54781380 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 281946 54815778 ~ 54826525 (-)
G28156 NA non-coding downstream 66808 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 125951 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 164735 54335849 ~ 54365033 (-)
LOC103031114 NA non-coding downstream 264140 54258911 ~ 54265628 (-)
G28134 NA non-coding downstream 291597 54234231 ~ 54238171 (-)
G28231 gopc non-coding upstream 129887 54663719 ~ 54665970 (-)
G28262 igf2r non-coding upstream 316720 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 323878 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 333615 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 540169 55074001 ~ 55079665 (-)
LOC103040805 NA other downstream 474071 54049795 ~ 54055697 (-)
akap7 NA other downstream 622356 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 907410 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1679862 52786472 ~ 52849906 (-)
LOC103040973 NA other downstream 2207848 52293880 ~ 52321920 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other upstream 23056 54556888 ~ 54623840 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 732259 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 898249 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 966068 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 1069038 55602870 ~ 55606886 (-)

Expression


Co-expression Network