G28231 (gopc)


Basic Information

Item Value
gene id G28231
gene name gopc
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54663719 ~ 54665970 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37849
GCTACAGTGGAGTGGTGGTGTAGGCCCggtggtgtgttgtgttttaataataacGCTAGCTACCTCCAGTTTGTGGTTGAGCTGGAAGACGGTCTGCGCTTTGTGGCAGAGCTGCGCGaagcaggagctgaggctggtcATCTTCTGGCGGCCTTCATAGGTGATGTCGGCCTGGTCCGGGTCGATCTCGCCCAGCAGCAGATCCACGTCCACGAACGCCTTGTCGAACTCCTTCTCCAGAACCTCCAGCCAGCGGAACATCGACATGCCCGAGGCCGGAGCTCCGAGCGCGGCTCCCTGCGCGGCGCCCGCCGACATCCCCGCCCTGTAGACCGTCTAACACCGAGCGGATACCCGAGCACCCCCACAACAAcaccaccagcagcactgcagagCCTCGGTTCAGCGACCCCGCAGCCCTCAGTCTGTACAGCCCGGCTCTCTGAGTCCCTTAAGCTCAGTCTATCACAgtcagaggagaaggaggaagaaCTTCAGCGGAGGAGTAAATACCGCTGATCCTCCT

Function

symbol description
gopc Predicted to enable transmembrane transporter binding activity. Predicted to be involved in cytoplasmic sequestering of CFTR protein and negative regulation of protein localization to cell surface. Predicted to be active in Golgi apparatus; membrane; and trans-Golgi network transport vesicle. Orthologous to human GOPC (golgi associated PDZ and coiled-coil motif containing).

NR:

description
PREDICTED: Golgi-associated PDZ and coiled-coil motif-containing protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37849 True 526 lncRNA 0.60 2 54663719 54665970

Neighbor

gene id symbol gene type direction distance location
LOC103032288 LOC108424430 coding downstream 4693 54655404 ~ 54659026 (-)
nus1 nus1,LOC107736830 coding downstream 11255 54642015 ~ 54652464 (-)
tab2 tab2 coding downstream 139414 54468017 ~ 54524305 (-)
tmem200a tmem200a,LOC107697489,LOC107570881,LOC107653146,LOC107560495 coding downstream 473398 54163102 ~ 54190321 (-)
med23 med23 coding downstream 947811 53689367 ~ 53715908 (-)
dcbld1 NA coding upstream 29213 54695183 ~ 54732688 (-)
vgll2 vgll2 coding upstream 106305 54772275 ~ 54781380 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding upstream 149808 54815778 ~ 54826525 (-)
trnal-cag_7 NA coding upstream 178092 54844062 ~ 54844144 (-)
LOC103025507 NA coding upstream 578146 55244116 ~ 55258518 (-)
G28221 NA non-coding downstream 129887 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 200759 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 259902 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 298686 54335849 ~ 54365033 (-)
LOC103031114 NA non-coding downstream 398091 54258911 ~ 54265628 (-)
G28262 igf2r non-coding upstream 184582 54850552 ~ 54856843 (-)
G28263 igf2r non-coding upstream 191740 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 201477 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 408031 55074001 ~ 55079665 (-)
G28299 LOC103032688 non-coding upstream 491348 55157318 ~ 55159137 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 39879 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 608022 54049795 ~ 54055697 (-)
akap7 NA other downstream 756307 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1041361 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 1813813 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 600121 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 766111 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 833930 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 936900 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 968562 55634532 ~ 55641375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004342 gopc,LOC106607787,LOC107603060,LOC107678854 coding CM030121.1 CM030121.1 43610781 ~ 43611095 (+)