G28262 (igf2r)


Basic Information

Item Value
gene id G28262
gene name igf2r
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 54850552 ~ 54856843 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37898
TGGCCATTCTCTGCAGTAGAGTTGCACTCAAAGTTGATGACGGTCATGCGCTGGAAGCCTGAGCTGCAGCTGCTTCCTCCTGGATAGATAAGAGTGAGTTCTCCGTCAGAGTACCTCAGAATTTGATTCTCGTATCTCCCAGCTATCTTGTTCACTGTTCCATCATCCTTCACCTGACAGGAGGATATGAAACCTTTGGAGTCTTTGCATTCGCCAGCTGTGGTCCCCCCGCACACATTCAGATAGAAAATGTAGCTGTCCTTCCCGATCTTGGCCTCAGCTGTGTAGGGGGTTTCTCCAGagctgtgtgtgagttgtgtgaggTCGACAGAGATGTCGTGCTGTTTGCTGGTCAGTGTGCAATTGTGGCTCTCTACGTAGTCTCTGTGGCAGGCATACTCTGTCACCCACTCAATCTCATAGCGGCAGTTCGTCTTGGCTGTCAGCTTGGGGTCGCTCCCCTGCTGTCTGCTGGTTGGACAGATGAAGGTGATGGTAACAGCAGGCTTGTGTCCATCACACAGCTCACTTTCAGCTTCACCTTCATACCGCAGCCTTAACCTATCTTTAGAGATCAGCTCCAGAGGCTTCACTGGTTTACCCATGCTGAAGGATCTGCTGCGGTTAGTAAGACAGGCAGCAGAGTCTACAGGACACAGGCTCTCTGGTCGGTTCAAATTTCTGCATATGTTAATATAAAAGTCCACATCATCGTCTGAATCATCGACCAGGTAGCCGTCTGTCACTTTGATGAGAGGGTTGAGGTCGTGTTTTTTTCCATCAGAATCAAAGACGTAGCACGGCACCTCATTTTGTGGTTTGAATTTCTCTCTTTTGCAGGCGACATATGATTTCCACTCAAAGTAATGCACACACTGCGAAACAGTGATGAACTCTGGTGTGCCCATTGTTTTACCACACTGGAAACTGATGCTGCTCTGAACTTTGTTGGTTGCATCTTGGCACTTCTGAGTGCTGTTAAAAACAAGCACTCCATCAGAGGACGTCTGCAGGGCTAGCTCAcct

Function

symbol description
igf2r Predicted to enable insulin-like growth factor binding activity. Predicted to act upstream of or within lysosomal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome; plasma membrane; and trans-Golgi network. Is expressed in nervous system; presumptive neural retina; and somite. Human ortholog(s) of this gene implicated in diabetes mellitus (multiple); hepatocellular carcinoma; in situ carcinoma (multiple); and nephroblastoma. Orthologous to human IGF2R (insulin like growth factor 2 receptor).

NR:

description
PREDICTED: cation-independent mannose-6-phosphate receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37898 True 1026 lncRNA 0.49 9 54850552 54856843

Neighbor

gene id symbol gene type direction distance location
trnal-cag_7 NA coding downstream 6408 54844062 ~ 54844144 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding downstream 24027 54815778 ~ 54826525 (-)
vgll2 vgll2 coding downstream 69172 54772275 ~ 54781380 (-)
dcbld1 NA coding downstream 117864 54695183 ~ 54732688 (-)
LOC103032288 LOC108424430 coding downstream 191526 54655404 ~ 54659026 (-)
LOC103025507 NA coding upstream 387273 55244116 ~ 55258518 (-)
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding upstream 458117 55314960 ~ 55367322 (-)
LOC103021751 NA coding upstream 591283 55448126 ~ 55460855 (-)
ttc32 ttc32 coding upstream 605191 55462034 ~ 55465720 (-)
laptm4a laptm4a coding upstream 629769 55486612 ~ 55494508 (-)
G28231 gopc non-coding downstream 184582 54663719 ~ 54665970 (-)
G28221 NA non-coding downstream 316720 54529768 ~ 54533832 (-)
G28156 NA non-coding downstream 387592 54462706 ~ 54462960 (-)
G28145 NA non-coding downstream 446735 54401282 ~ 54403817 (-)
G28140 NA non-coding downstream 485519 54335849 ~ 54365033 (-)
G28263 igf2r non-coding upstream 867 54857710 ~ 54859047 (-)
G28265 igf2r non-coding upstream 10604 54867447 ~ 54871308 (-)
G28282 NA non-coding upstream 217158 55074001 ~ 55079665 (-)
G28299 LOC103032688 non-coding upstream 300475 55157318 ~ 55159137 (-)
G28306 NA non-coding upstream 314291 55171134 ~ 55171609 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 226712 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 794855 54049795 ~ 54055697 (-)
akap7 NA other downstream 943140 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1228194 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 2000646 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 409248 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 575238 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 643057 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 746027 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 777689 55634532 ~ 55641375 (-)

Expression


Co-expression Network