G28282


Basic Information

Item Value
gene id G28282
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55074001 ~ 55079665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37964
CTTTATCACTGGTCCAGTCTCTGAAGATCTGCAGTGGACACTCTGTATCATCCAGTATGGTCTCCTTCACAGGCTTATCATCAGAGTGGACAACCCGTGCAATGCAGTACTCTCTGGGGTTCTCCTTCTCCAAGCCATATTTCTCTAGAGCCTCGGCCACTGCAAAGTCAGCTGTGTCAGTAGTGGACAGCAGGATGGTCTTATAGGGGATGTTGGGCTTCAGACTGTCTGCATAGATCCTCAGTGTCCCCCctgagtCTGGTCGACCATCACCACTGCGGAACTCTTGCATTCTCTTCTCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37964 True 305 lncRNA 0.51 3 55074001 55079665

Neighbor

gene id symbol gene type direction distance location
trnal-cag_7 NA coding downstream 229857 54844062 ~ 54844144 (-)
rfx6 rfx6,LOC107678847,LOC104962418 coding downstream 247476 54815778 ~ 54826525 (-)
vgll2 vgll2 coding downstream 292621 54772275 ~ 54781380 (-)
dcbld1 NA coding downstream 341313 54695183 ~ 54732688 (-)
LOC103032288 LOC108424430 coding downstream 414975 54655404 ~ 54659026 (-)
LOC103025507 NA coding upstream 164451 55244116 ~ 55258518 (-)
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding upstream 235295 55314960 ~ 55367322 (-)
LOC103021751 NA coding upstream 368461 55448126 ~ 55460855 (-)
ttc32 ttc32 coding upstream 382369 55462034 ~ 55465720 (-)
laptm4a laptm4a coding upstream 406947 55486612 ~ 55494508 (-)
G28265 igf2r non-coding downstream 202693 54867447 ~ 54871308 (-)
G28263 igf2r non-coding downstream 214954 54857710 ~ 54859047 (-)
G28262 igf2r non-coding downstream 217158 54850552 ~ 54856843 (-)
G28231 gopc non-coding downstream 408031 54663719 ~ 54665970 (-)
G28221 NA non-coding downstream 540169 54529768 ~ 54533832 (-)
G28299 LOC103032688 non-coding upstream 77653 55157318 ~ 55159137 (-)
G28306 NA non-coding upstream 91469 55171134 ~ 55171609 (-)
G28315 NA non-coding upstream 167101 55246766 ~ 55247603 (-)
G28386 NA non-coding upstream 310200 55389865 ~ 55390330 (-)
G28390 LOC108424481,LOC108257757 non-coding upstream 322071 55401736 ~ 55405004 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 450161 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 1018304 54049795 ~ 54055697 (-)
akap7 NA other downstream 1166589 53742880 ~ 53907412 (-)
trnal-cag NA other downstream 1451643 53622071 ~ 53622358 (-)
G27821 LOC108413844,LOC108411774,LOC108411773,LOC108417426,LOC108417958 other downstream 2224095 52786472 ~ 52849906 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other upstream 186426 55266091 ~ 55314179 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other upstream 352416 55432081 ~ 55444669 (-)
LOC111189318 NA other upstream 420235 55499900 ~ 55501760 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 523205 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 554867 55634532 ~ 55641375 (-)

Expression


Co-expression Network