G28302


Basic Information

Item Value
gene id G28302
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55163794 ~ 55165019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU37988
gctacctgacagtttttaaaactgccggcatactgtcagcaagccccctgacagtttttagtagtgccggcgtactttcaggaagctacctgacagtttttaatactgccggcgtactgtcagctagccccctgacagtttttagtagtgccggcgtactgtcaggaagccccctgacagtttttagtagtgccggcgtactttcaggaagctacctgacagtttttaatactgccggcgtactgtcagctagccccctgacagtttttagtagtgccggcgtactgtcaggaagctccctgacagtttttaatactgccggcgtactgtcagcaagccccctgacagtttttaaaactgccggcgtactgtcaggaagccccctgtcagtttttagtaCTGCCGGGTACGTGCCTGGCACTGCCGGGTCGATGAAAAAGTGGCTGGCGGGTGACGTCACGCAGACCCACAACTGCCGCCCGTCTCCCGGCAGGCAAAGATCCAACCCCAACTGTTTGGACGTTTAACTATGACCACAACTTGGAGGAcaatatgcagttaaacatttgatCTTCGGACTAGtaccctCAAGAAAACTTTctctccagtttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37988 True 618 lncRNA 0.51 2 55163794 55165019

Neighbor

gene id symbol gene type direction distance location
afdn afdn coding upstream 8345 55011582 ~ 55155449 (+)
igf2r igf2r coding upstream 283404 54845252 ~ 54880390 (+)
tdrd15 NA coding upstream 319799 54827624 ~ 54843995 (+)
LOC103038902 gopc,LOC107743304,LOC107727658,LOC107697149 coding upstream 474042 54665408 ~ 54689752 (+)
LOC103031746 NA coding upstream 708270 54433723 ~ 54455524 (+)
LOC103024560 snx9,snx9b,LOC103024560,LOC108424479 coding downstream 101068 55266087 ~ 55296450 (+)
LOC103035140 NA coding downstream 143134 55308153 ~ 55311094 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 242355 55407374 ~ 55425667 (+)
lin9 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 267061 55432080 ~ 55442139 (+)
LOC103047723 matn3a,LOC108424436,LOC108257995 coding downstream 302107 55467126 ~ 55481255 (+)
G28300 NA non-coding upstream 838 55162490 ~ 55162956 (+)
G28212 dcbld1 non-coding upstream 465429 54695195 ~ 54698365 (+)
G28197 NA non-coding upstream 520366 54595474 ~ 54643428 (+)
G28196 NA non-coding upstream 625331 54537768 ~ 54538463 (+)
G28194 NA non-coding upstream 626034 54534929 ~ 54537760 (+)
G28361 NA non-coding downstream 293974 55458993 ~ 55459300 (+)
G28362 NA non-coding downstream 297056 55462075 ~ 55465285 (+)
LOC111189292 NA non-coding downstream 318487 55483506 ~ 55487476 (+)
G28417 NA non-coding downstream 377230 55542249 ~ 55564694 (+)
G28460 NA non-coding downstream 729605 55894624 ~ 55960470 (+)
G28072 NA other upstream 784488 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 1510064 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 1510856 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 1511205 53652508 ~ 53652589 (+)
trnal-cag_6 NA other upstream 1511577 53652135 ~ 53652217 (+)
LOC103023616 LOC108424481,LOC108257757 other downstream 215585 55380604 ~ 55403330 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 1067720 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 1125728 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 1172137 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 1530825 56695844 ~ 56706092 (+)

Expression


Co-expression Network