LOC111189318


Basic Information

Item Value
gene id LOC111189318
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 55499900 ~ 55501760 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38133
tttaggtgcagacCGGAACGCAGCGGAGCTTCATCGcggaggattttaggtgcagacCGAAACGTAGCGGAGCTTCATTGcggaggattttaggtgcggaccgGAACGCAGCGGAGCTTCATCGTGGGGGATTTTAGGTGCAGACCGAAACGTAGCGGAGCTTCATCGCGGGGGATTTTAGGTGCAGACCGGAACGCAGCGGAGCTTCATCGcggaggattttaggtgcacacCGAAACGTAGCGGAGCTTCATCGCGGGGGATTTTGGGTGCGGAGCAGTGTGCggccgagatccgctcggttaagGTCGCGGGAGGTTTTAGATGCGGATCGGAGTGCAGCCAAGCTTCCTCGCGGGACATTTTAACGTTAGATGCGATGCGGAGCGGAGACGATCCATGCCTAGCCTAGCCGaacctatctggctacgtgccagAGGCTTAGGCTTAAGGCCAAGGCTTAGTGTGCTGCTTCTGTTGTCTCCACTGTCTCAGGTTAAAAACCTCCGCTCTGTAGTCTCTCCGGACACCATCTCCACCATGGCTCACCTCTTCACTCGTGAAGAGCGTGAAATGGACAGTGAGGTAGAGGACGCTGCTCGCACCCTCCTTCACAAGGCTGGGGAGACCAGCCTTTTTATAAGGCGGGTGTGGAGCTAGCCCTCAGCACCATGGTGCTCTCCTGTTCACCTGGCCGAGTCCTGCAAGTTACTGCTGGATGGTGGACTACGACACAAAAACCTGCTCTCGAGGGCTGCCACTGCACTGAGCCTGTTGAGGCTCCTGCAGGTGGTCGGGGTTTCTCGTGTGCTGACTGGCAGAAAGACGTTTGCCAGTGAACTTGTTCCTGCCATCAGCACACTGGCCTTCGATGCAGCCCAGGAAGTGAGGACCCACGCCCCAGCCGTATTGTGGTACTTGGGCACCCACGAGGAGACTGAGAGGGCCGTGGAGTAATTTATACAGCTAAAGGACCGATCATCAGTGAAGAAATTGCTTCACAagtaatcaattaatcaatttatcattttttcaaTTATTGTCTGTAGTTGGGATGTTATTCAGTGTTCAGTTGTTCAGACTGGGTTTGGGGTCGAATGCTCAGTTCTAGAGAAGCTTACAGACTCAGAGCTGTTCACAGTGGTGGAGAACGGGAACCATACCAGAAGAGGTGGATAAGGCAGCGGCTCTACCTTCCTCTTGCCAAAGGCTCTTTCTTAGAGTCCTGGTAAGTGAGGTAACCCAGTTTCTGGGCATCCTCTAGGGAGATGGGGCACTGCTTGGTGGGAAACGCACCGGCCCTGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCCGCCCCCAAACAAGCCCTGCAAAGCTTGTGAGGGGTTCGCCCAGGACCGGCCGGCGTCCCCCAGCCACTCTCTTAGAGGCAGTCCACCCTTCAGACGTATGGGACCCGTCTCTATCACTGTGACCAGCTTCTTTGGaacaaaacatttaacacaaaacccaccaaaaacactgaatacatCTCAATCAGAccagcaaaataaaaatcctaaaaaaaaaaaa
>TU38134
tttaggtgcagacCGGAACGCAGCGGAGCTTCATCGcggaggattttaggtgcagacCGAAACGTAGCGGAGCTTCATTGcggaggattttagGTGCAGACCGGAACGCAGCGGAGCTTCATCGcggaggattttaggtgcagacCGAAACGTAGCGGAGCTTCATCGCGGGGGATTTTGGGTGCAGACCGAAACGTAGCGGAGCTTCATCGcggaggattttaggtgcacacCGAAACGTAGCGGAGCTTCATCGCGGGGGATTTTGGGTGCGGAGCAGTGTGCggccgagatccgctcggttaagGTCGCGGGAGGTTTTAGATGCGGATCGGAGTGCAGCCAAGCTTCCTCGCGGGACATTTTAACGTTAGATGCGATGCGGAGCGGAGACGATCCATGCCTAGCCTAGCCGaacctatctggctacgtgccagAGGCTTAGGCTTAAGGCCAAGGCTTAGTGTGCTGCTTCTGTTGTCTCCACTGTCTCAGGTTAAAAACCTCCGCTCTGTAGTCTCTCCGGACACCATCTCCACCATGGCTCACCTCTTCACTCGTGAAGAGCGTGAAATGGACAGTGAGGTAGAGGACGCTGCTCGCACCCTCCTTCACAAGGCTGGGGAGACCAGCCTTTTTATAAGGCGGGTGTGGAGCTAGCCCTCAGCACCATGGTGCTCTCCTGTTCACCTGGCCGAGTCCTGCAAGTTACTGCTGGATGGTGGACTACGACACAAAAACCTGCTCTCGAGGGCTGCCACTGCACTGAGCCTGTTGAGGCTCCTGCAGGTGGTCGGGGTTTCTCGTGTGCTGACTGGCAGAAAGACGTTTGCCAGTGAACTTGTTCCTGCCATCAGCACACTGGCCTTCGATGCAGCCCAGGAAGTGAGGACCCACGCCCCAGCCGTATTGTGGTACTTGGGCACCCACGAGGAGACTGAGAGGGCCGTGGAGTAATTTATACAGCTAAAGGACCGATCATCAGTGAAGAAATTGCTTCACAagtaatcaattaatcaatttatcattttttcaaTTATTGTCTGTAGTTGGGATGTTATTCAGTGTTCAGTTGTTCAGACTGGGTTTGGGGTCGAATGCTCAGTTCTAGAGAAGCTTACAGACTCAGAGCTGTTCACAGTGGTGGAGAACGGGAACCATACCAGAAGAGGTGGATAAGGCAGCGGCTCTACCTTCCTCTTGCCAAAGGCTCTTTCTTAGAGTCCTGGTAAGTGAGGTAACCCAGTTTCTGGGCATCCTCTAGGGAGATGGGGCACTGCTTGGTGGGAAACGCACCGGCCCTGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCCGCCCCCAAACAAGCCCTGCAAAGCTTGTGAGGGGTTCGCCCAGGACCGGCCGGCGTCCCCCAGCCACTCTCTTAGAGGCAGTCCACCCTTCAGACGTATGGGACCCGTCTCTATCACTGTGACCAGCTTCTTTGGaacaaaacatttaacacaaaacccaccaaaaacactgaatacatCTCAATCAGAccagcaaaataaaaatcctaaaaaaaaaaaa
>XR_002648717.1
AAACGTAGCGGAGCTTCATCGcggaggattttaggtgcacacCGAAACGTAGCGGAGCTTCATCGCGGGGGATTTTGGGTGCGGAGCAGTGTGCggccgagatccgctcggttaagGTCGCGGGAGGTTTTAGATGCGGATCGGAGTGCAGCCAAGCTTCCTCGCGGGACATTTTAACGTTAGATGCGATGCGGAGCGGAGACGATCCATGCCTAGCCTAGCCGaacctatctggctacgtgccagAGGCTTAGGCTTAAGGCCAAGGCTTAGTGTGCTGCTTCTGTTGTCTCCACTGTCTCAGGTTAAAAACCTCCGCTCTGTAGTCTCTCCGGACACCATCTCCACCATGGCTCACCTCTTCACTCGTGAAGAGCGTGAAATGGACAGTGAGGTAGAGGACGCTGCTCGCACCCTCCTTCACAAGGCTGGGGAGACCAGCCTTTTTATAAGGCGGGTGTGGAGCTAGCCCTCAGCACCATGGTGCTCTCCTGTTCACCTGGCCGAGTCCTGCAAGTTACTGCTGGATGGTGGACTACGACACAAAAACCTGCTCTCGAGGGCTGCCACTGCACTGAGCCTGTTGAGGCTCCTGCAGGTGGTCGGGGTTTCTCGTGTGCTGACTGGCAGAAAGACGTTTGCCAGTGAACTTGTTCCTGCCATCAGCACACTGGCCTTCGATGCAGCCCAGGAAGTGAGGACCCACGCCCCAGCCGTATTGTGGTACTTGGGCACCCACGAGGAGACTGAGAGGGCCGTGGAGTAATTTATACAGCTAAAGGACCGATCATCAGTGAAGAAATTGCTTCACAagtaatcaattaatcaatttatcattttttcaaTTATTGTCTGTAGTTGGGATGTTATTCAGTGTTCAGTTGTTCAGACTGGGTTTGGGGTCGAATGCTCAGTTCTAGAGAAGCTTACAGACTCAGAGCTGTTCACAGTGGTGGAGAACGGGAACCATACCAGAAGAGGTGGATAAGGCAGCGGCTCTACCTTCCTCTTGCCAAAGGCTCTTTCTTAGAGTCCTGGTAAGTGAGGTAACCCAGTTTCTGGGCATCCTCTAGGGAGATGGGGCACTGCTTGGTGGGAAACGCACCGGCCCTGTGGCATCAGGGCTTCCCAGTCAACCAGCTGGGAATGTCCCGCCCCCAAACAAGCCCTGCAAAGCTTGTGAGGGGTTCGCCCAGGACCGGCCGGCGTCCCCCAGCCACTCTCTTAGAGGCAGTCCACCCTTCAGACGTATGGGACCCGTCTCTATCACTGTGACCAGCTTCTTTGGaacaaaacatttaacacaaaacccaccaaaaacactgaatacatCTCAATCAGAccagcaaaataaaaatcctaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38133 True 1564 TUCP 0.50 4 55499900 55501760
TU38134 False 1564 TUCP 0.52 4 55499900 55501760
XR_002648717.1 False 1365 lncRNA 0.53 3 55499908 55501481

Neighbor

gene id symbol gene type direction distance location
laptm4a laptm4a coding downstream 5392 55486612 ~ 55494508 (-)
ttc32 ttc32 coding downstream 34180 55462034 ~ 55465720 (-)
LOC103021751 NA coding downstream 39045 55448126 ~ 55460855 (-)
LOC103024257 efr3b,LOC108424480,LOC107678842,LOC107697142,LOC107549699 coding downstream 132578 55314960 ~ 55367322 (-)
LOC103025507 NA coding downstream 241382 55244116 ~ 55258518 (-)
LOC103035409 NA coding upstream 10999 55512759 ~ 55528667 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding upstream 59810 55561570 ~ 55564747 (-)
capn3 LOC108424491,LOC108257553 coding upstream 73978 55575738 ~ 55598081 (-)
LOC103045157 LOC103045157,LOC108424494,LOC108258171,LOC105908978 coding upstream 117786 55619546 ~ 55632642 (-)
serac1 serac1,LOC107555766 coding upstream 139124 55640884 ~ 55652393 (-)
G28395 NA non-coding downstream 74251 55424296 ~ 55425649 (-)
G28394 parp1,LOC107678834 non-coding downstream 76157 55418687 ~ 55423743 (-)
G28390 LOC108424481,LOC108257757 non-coding downstream 94896 55401736 ~ 55405004 (-)
G28386 NA non-coding downstream 109570 55389865 ~ 55390330 (-)
G28315 NA non-coding downstream 252297 55246766 ~ 55247603 (-)
G28505 NA non-coding upstream 133765 55635525 ~ 55636660 (-)
G28568 NA non-coding upstream 384563 55886323 ~ 55890103 (-)
G28567 NA non-coding upstream 392749 55894509 ~ 55894839 (-)
G28604 NA non-coding upstream 624397 56126157 ~ 56126524 (-)
G28606 NA non-coding upstream 627435 56129195 ~ 56129732 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 55231 55432081 ~ 55444669 (-)
LOC103023935 snx9b,LOC103024560,LOC108424479,LOC108424433,LOC107603096,LOC107549701,LOC108257753,LOC107697150 other downstream 185721 55266091 ~ 55314179 (-)
LOC111188920 slc35f1,LOC107549682,LOC107743307,LOC107697151,LOC107678858,LOC107727669,LOC106571386 other downstream 876060 54556888 ~ 54623840 (-)
LOC103040805 NA other downstream 1444203 54049795 ~ 54055697 (-)
akap7 NA other downstream 1592488 53742880 ~ 53907412 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other upstream 101110 55602870 ~ 55606886 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 132772 55634532 ~ 55641375 (-)
G28536 NA other upstream 314112 55815872 ~ 55816598 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 1138591 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 2310502 57812262 ~ 57841318 (-)

Expression


Co-expression Network