G28604


Basic Information

Item Value
gene id G28604
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56126157 ~ 56126524 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38404
agctagtgtaacctctgcttatattgtcaaatttttatatccccacagaacacgtttttaaaacgttattcagctctattcaaaaaaggtgtggttatggtaaaagggctgcttatgggcgggaccaataacagaccgtcagctccgctctgccccgctctgcagcctgtgaccgcgaggcagccctcaggggcggggttatttaaatgagtaggctgtctctccacagtctttctccctcctctggtctctactgcgcagaatcaggtggcaggatcgccaacatggcggaagattttggcttcattttcattgaatgaatgggaacggagacacggcgtccatctttttttacagtctctgattta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU38404 True 368 lncRNA 0.46 1 56126157 56126524

Neighbor

gene id symbol gene type direction distance location
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding downstream 597 56055205 ~ 56125560 (-)
LOC103043128 NA coding downstream 82872 55949627 ~ 56043285 (-)
armt1 armt1 coding downstream 194971 55924510 ~ 55931186 (-)
LOC103043741 LOC108424497 coding downstream 206911 55889634 ~ 55919246 (-)
LOC103044058 LOC108424438 coding downstream 467025 55654005 ~ 55659132 (-)
gpr176 gpr176 coding upstream 27190 56153714 ~ 56170803 (-)
LOC103032431 LOC108424505 coding upstream 46933 56173457 ~ 56187855 (-)
LOC103029201 LOC103029201 coding upstream 114447 56240971 ~ 56252577 (-)
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding upstream 147962 56274486 ~ 56289838 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 586093 56712617 ~ 56723774 (-)
G28567 NA non-coding downstream 231318 55894509 ~ 55894839 (-)
G28568 NA non-coding downstream 236054 55886323 ~ 55890103 (-)
G28505 NA non-coding downstream 489497 55635525 ~ 55636660 (-)
G28395 NA non-coding downstream 700508 55424296 ~ 55425649 (-)
G28394 parp1,LOC107678834 non-coding downstream 702414 55418687 ~ 55423743 (-)
G28606 NA non-coding upstream 2671 56129195 ~ 56129732 (-)
G28617 NA non-coding upstream 20652 56147176 ~ 56147738 (-)
G28634 NA non-coding upstream 63965 56190489 ~ 56190689 (-)
G28661 NA non-coding upstream 88020 56214544 ~ 56227854 (-)
G28657 srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313 non-coding upstream 106183 56232707 ~ 56239723 (-)
G28536 NA other downstream 309559 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 484782 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 519271 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 624397 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 681488 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 513827 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1685738 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1865117 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 2032683 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2806439 58932963 ~ 58934789 (-)

Expression


Co-expression Network