G28623


Basic Information

Item Value
gene id G28623
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56179463 ~ 56187540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38423
GTTCATTAGTGCTGAGATAATGGAGACTGtttaaatgcagtaaataaaaacagctctaCTGGAGTTTGATGTGGGCGTAGGGACTGACCGGGCGGTATGAAGAGGGTCCCCCGGATCCTGCCGTCTCTGACAGGGACTCTCCTCACCCCCTGCACCGCGAAGTGTCTCTCATTGGTGGCCTGGGCGAGGGTCTTCCCCCCGCTGGAAGCCTCTATGTGAACGAACAGGGGGGTCGAGGCGTCCCTCTTCACCACTTTACTGTGGGGCACGTCCGCCTCCATCGACCAGAACAGACCCATCGGCTCGACCCCCGTGTAGGAGCCCCCCAGAGAGGCGTGTCGGCTCAGGTCCAGCTCCCCGCTCCTGTCCGCCTGGTACCGGGCCGCAGCTCTGAACACCACCCCCTTATCGTCCTGCAGGAGGGAGCGGAGCTCCACGCGCTGCCGAGGCTCCAGTCCGCTCACTGTGATCCGGACACTGTCCTCATAAGAGCAGCTGCTGCTCGGGAGGATCACAACTCGCACAGAGTCTCCGGAGTAGGTCTTAATTAGGCCGTTTCTCGGTATGAGTTTACTGAAGCGCCGCAGCAGCACCGCCGCCATCTCTCCGCtcttagtattattattattttcaccgGGAAACAGCCGGGTTGCCAGATCCTTATGCGTAAGAATTCCTCTGCAGCAGCGTGACCTTTGGTACAAATACTCGAGGAAGTTAAAGCATGTGTGACCGGTTAACAGGGGGTCAGTGTAAGTGTATCA

Function

NR:

description
PREDICTED: cytochrome P450 27C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38423 True 764 lncRNA 0.47 2 56179463 56187540

Neighbor

gene id symbol gene type direction distance location
LOC103042812 zbtb2,zbtb2b,LOC103042812,LOC108424498 coding upstream 230513 55936150 ~ 55948950 (+)
LOC103034817 LOC108424415 coding upstream 290787 55666605 ~ 55888676 (+)
nrbp1 nrbp1,LOC107659221,LOC107737320,LOC107665360,LOC103372645 coding upstream 563988 55599802 ~ 55615475 (+)
LOC103046183 NA coding upstream 604619 55565611 ~ 55574844 (+)
LOC103045772 ttbk2b,LOC108424489,LOC108258239,LOC107721367,LOC107556162,LOC107737314 coding upstream 619747 55541034 ~ 55559716 (+)
susd6 susd6 coding downstream 4839 56192379 ~ 56227029 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding downstream 74096 56261636 ~ 56274328 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding downstream 298960 56486500 ~ 56635493 (+)
pigh pigh coding downstream 536840 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 572166 56759706 ~ 56765799 (+)
G28595 NA non-coding upstream 49783 56129351 ~ 56129680 (+)
G28594 NA non-coding upstream 53008 56126162 ~ 56126455 (+)
G28593 NA non-coding upstream 56664 56122137 ~ 56122799 (+)
G28588 NA non-coding upstream 78662 56098663 ~ 56100801 (+)
G28460 NA non-coding upstream 218993 55894624 ~ 55960470 (+)
G28629 NA non-coding downstream 965 56188505 ~ 56188754 (+)
G28631 NA non-coding downstream 1713 56189253 ~ 56189469 (+)
G28632 NA non-coding downstream 2066 56189606 ~ 56189835 (+)
G28633 NA non-coding downstream 2527 56190067 ~ 56190283 (+)
G28637 NA non-coding downstream 26911 56214451 ~ 56227860 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 776133 55380604 ~ 55403330 (+)
G28072 NA other upstream 1800157 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 2525733 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 2526525 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 2526874 53652508 ~ 53652589 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other downstream 45199 56232739 ~ 56239729 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 103207 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 149616 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 508304 56695844 ~ 56706092 (+)
G28865 NA other downstream 1214385 57401925 ~ 57402392 (+)

Expression


Co-expression Network