G57903


Basic Information

Item Value
gene id G57903
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12473935 ~ 12474530 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65948
GCCATGGGAGATGTTCAACGTCACTTTAATGTTCATCAAACCATTTTGTCACAAGTCTTGCTGTGTGTATTGGTGCATTATCATGCTGATACATGGCTTCCCCTTCAGGGTACAATGTTTGAACCATTTGGTGCACACGGTCCTCCAGAATGGTTCAGTAGTCCTTGGCAGTGACGCGCTCATCAAGCACAGTAGGAAATGCCATGATATTGCAGCCCAAACCATCACTGATCCACCCTTGTGATTCACTCTGGGCAGCAACAGTCTGGTGATAAGCCTCTTTGGATCTTGTCCACACTATAACTTCCACGGATGTGGGAAAGACAGTGAAGGTGGACTCATCAGCGAACAATACATGTTTCACATTGTCCACAGCCCAAGATTTGCACTGTTTGCACCAATGAAACTGACATTTGGCATTGGCACGAGTGACCAAAGGTTTGGCTATAGCAACTCGATCATGAATATTGACTGTTTTGGTGGAAACAGGAAAGTCGAGATGCACATTTAATTCTGCAGTGATTTGGGCAGCTGTGTTTTTTTTGGATACAATCCAGGTTAGTATCTGGACATCCCTTTCAGACAGCTTCCTCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU65948 True 596 lncRNA 0.45 1 12473935 12474530

Neighbor

gene id symbol gene type direction distance location
CI01000009_12432736_12435509 NA coding upstream 38044 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 83270 12385222 ~ 12390665 (+)
CI01000009_12351325_12366549 PCBP3 coding upstream 107338 12351325 ~ 12366597 (+)
CI01000009_12249416_12290497 COL18A1 coding upstream 183337 12248963 ~ 12290598 (+)
CI01000009_12198114_12221988 NA coding upstream 251942 12196699 ~ 12221993 (+)
CI01000009_12504532_12504815 NA coding downstream 29850 12504380 ~ 12504894 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding downstream 171954 12646484 ~ 12653857 (+)
CI01000009_12854692_12859028 NA coding downstream 379663 12854193 ~ 12861031 (+)
CI01000009_13194613_13197758 NA coding downstream 719907 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 917776 13392306 ~ 13476807 (+)
G57900 NA non-coding upstream 3331 12470282 ~ 12470604 (+)
G57896 NA non-coding upstream 10983 12462546 ~ 12462952 (+)
G57890 NA non-coding upstream 18855 12454786 ~ 12455080 (+)
G57871 NA non-coding upstream 72883 12400478 ~ 12401052 (+)
G57704 NA non-coding upstream 101761 12305639 ~ 12372174 (+)
G57911 NA non-coding downstream 7214 12481744 ~ 12482032 (+)
G57756 NA non-coding downstream 54003 12528533 ~ 12594745 (+)
G57739 NA non-coding downstream 449463 12923993 ~ 12926242 (+)
G58005 NA non-coding downstream 565796 13040326 ~ 13047175 (+)
G58004 NA non-coding downstream 567283 13041813 ~ 13061580 (+)
G57811 NA other upstream 538684 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 706991 11761606 ~ 11766944 (+)
CI01000009_09853929_09854476 SAP18 other upstream 2617348 9853929 ~ 9856587 (+)
G56100 NA other upstream 3343649 9129300 ~ 9130286 (+)
G57682 NA other downstream 350939 12825469 ~ 12892339 (+)
G57691 NA other downstream 431914 12906444 ~ 12918465 (+)
G57701 NA other downstream 532113 13006643 ~ 13023138 (+)
G58028 NA other downstream 665848 13140378 ~ 13143608 (+)
G58382 NA other downstream 1559029 14039757 ~ 14039901 (+)

Expression


Co-expression Network