LOC103029514 (srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313)


Basic Information

Item Value
gene id LOC103029514
gene name srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56232739 ~ 56239729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38445
tgttgtagtagtgtgtgaCCCTCCCCCCGCCCCTCGCTGTGTTTTAGTAGCTGGAGGACACTCCGCTGTTTCCTCGCTCTGACGCCATTTTGTGAGTCGTCGTTGATCAGCAGCTGATCTCTTACACTGCCGTGTGAAGTGCAGGGAAGgcCTCTGTTTGTGGATCATGAGCGGCTGTCGTATATTCATCGGGCGGCTGAATCCCTCCGCCAGGGAGAAGGACGTTGAGCGCTTCTTCAAGGGCTACGGGAGGATCAGAGACATCGACCTAAAGAGAGGCTTCGGGTTTGTGGAGTTTGACGATCCGAGAGATGCTGAGGATGCTGTATATGAGCTTGATGGGAAAGAGCTGTGCAATGAGagGGTGACTATAGAACACGCACGGGTCCGCCTGCGTGGAGGCAGGGGTCGGGGAGGCGGAGGACGCTTCCCAGATCGTTATGGCCGTGGCTCACAGGATAGCCGGAGGAATCCCCCTCCGATGCGCACTGAGAACCGTCTGATTGTAGAGAATCTTTCTTCAAGAGTGAGCTGGCAGGTGAGTGCCCACTGCTTTAGTCTGTAATGTGTTCTGAATCTGAATAAGGTAAATCTGAGCATGTTGAACAGtaaattaataaacttttttgaaGTATTATGAGTCATTTGCATTAAAGGCAAATCTGTAAAGGCAAAGAGTTCTCATCAAGCTacctgaaaacatgttttaatcaaaACTATAGGTATGTAGCTTACTGCAATTATTAAGGACATTATACAGACGGAAAAAGATCATACACTAAACCATAGTAACTTGCCTGTTTTAACCAATTGTTCACCCCTTTATTTGCCAGCCTGATCGTTGTGTCGTATGGAAGAGCTCGCTAATGGTGGCCCTAAGCCCTTCAGGGTCCCTCTCTCTGGGTTGAGCCTGAGCCCCTCGTGGCGGTCTGTGTGGTCCTCTCCTAGTTGACCCCTGCTGGTGTGTGTGAACTCGCTCAGGGGGAGCTTTCCTCTCCTCTAGACGCATTGGCTGCCGCCTTACGGCGGAAATGGGACGGAGCCGTgctgaaagagagagcgagagaacgaAACAGAGAGGGGCAGAGAGAGCagaaagggaaagagacagagcaagtctGTGGCGTATTCGATCGAGGGGGTTCGGTAATTTGAGAGGCTTCGCTCGGTTTCCTCCCCCCATCCCGCTCACATGTGGCCCAGGAGTTAAGCTGCCATTCGAGGTTTTGGTCTGGGACAGACCCAGTGGCCACGCTCCCAGGTATCAGTCCACTCTCTTCCTCCCTGTTCACTCTCAGTGCCCCTACGGGGGCACACAGGGCGGGACTGGCAGGGGAAGCCCTCTGCCCTACCGCCTACAAAATGGGAGGCAtatgtattcattttttacTTGTCTGTCACAACAAGCCGTTCCACACAAATCCTTTGCTGGTCTGCTCTAAACACTTACGAGGTCCAAGAATATCAAAGCACTTctgaaattttaaaaatgtgcattaaGCCAGTCACATACATGATTTATCTCTAGGACACTCTTATTTATGTACATTCACAGAAAttgaagtatttttatttttttttcttgaaaacAATCTGTGACAACTAAACAGCAGCATTTATATCATCCACCTTAATATTTTGTTGAACTCACTAACAGTTACATCTAGATCCACAGGAATCTGCTGACCAGGTTTAAACTGGTGTTTAGAGATTCTTGGACTTAATATCCTGTCGTCAGACTATTCAATTAGACATTCATTTaggcatatatgtatatatttttttagtatattattaattaagtcTGGATTTGGTGCATATTCCAATAAGAGTGCTCTTTCACCTGTGTAGGACTTGAAGGATTTTATGAGGCAGGCTGGAGAGGTTACCTTTGCTGATGCTCATCGCCCAAAGCTCAATGAGGGTGTGGTTGAGTTTGCCTCCCACAGTGATCTGAAAAATGCTCTGGAGAAGCTATCTGGGAAAGAAATCAATGGAAGGAAGATCAAGCTCATTGAGGCAGCCAGGAAAAAGTCCAGAAGTCGCTCCAGGTCCAACAGCTCATCCCGTTCCCGTTCTCGTAGTCGCACGCCATCCCGCAGCCCCAAAGCCCACAAACGCTCGCGCAGCCGATCCTCAACCCCCTCACCCTCCCCCACCCAAAGAGCTAAGGAGACGAAGCGGGCCCGTTCAGAATCCAGATCTCCCCCACCCCAGCGGGCCCCAGCCTCTCGCTCTCCATCCACCGACAGCCGCTGCTGAAGCAGCTCCACCCATCCCGCTGAAGCTTCACTCTTCGGTCAGACACTGTTGGTCACGCTTGTGTTTGTTTAGCATCTGTTCCAAACTGGCGTTTCAACCCTTGTGAGCGACGGGACAGATTTAATATCTTTACAGCCACTGATAGCAGCAGTGACCTCGAGTCTGAAGCCTGCTGTGCACTCACAGTCTTCAGAGGTAAATTCATGTCCGTAGACAGAGCTGCAGTTTTCTACTGTTCTCGGTAAGCTTTGCGTTTGTGTCCTCTGAGTAGTGTCACATTTCCCCTGAATGAGAGCTGTGATCTTGCTAGTAATATTAATAGGTGAGtaccttttttatattaatttgtgCTTTTAGTCATTGTGTAACAGGAAACATTCAAATGCTGTTGTGGCACCTTGCATACTTCAAGCAaatgttgtgtgtttgttttatgtttcatCAGTCAAATATAATTTTCGTTTCACTTGATAGCGCTGAAATTGAGGACCTTGTTTAATAAATTGGTGCaagtttaaacatgttttaataattgTGTGGAATTTGgaattgtatgttttatttcagcATCAATATGGGTGTTGGCATAAAGGGTTTTGATGCATGCCACCTGACTGGGAATTGTCTGTCATTTTCTTATACTCTTCTACTGTAAACAAACCTTTCAATATCATTGGACATTGATTTGAATTCATGTATTACCAAATAAACTCACAAGAATCCAAACATGGCT
>XM_007232922.3
TAGTAGCTGGAGGACACTCCGCTGTTTCCTCGCTCTGACGCCATTTTGTGAGTCGTCGTTGATCAGCAGCTGATCTCTTACACTGCCGTGTGAAGTGCAGGGAAGgcCTCTGTTTGTGGATCATGAGCGGCTGTCGTATATTCATCGGGCGGCTGAATCCCTCCGCCAGGGAGAAGGACGTTGAGCGCTTCTTCAAGGGCTACGGGAGGATCAGAGACATCGACCTAAAGAGAGGCTTCGGGTTTGTGGAGTTTGACGATCCGAGAGATGCTGAGGATGCTGTATATGAGCTTGATGGGAAAGAGCTGTGCAATGAGagGGTGACTATAGAACACGCACGGGTCCGCCTGCGTGGAGGCAGGGGTCGGGGAGGCGGAGGACGCTTCCCAGATCGTTATGGCCGTGGCTCACAGGATAGCCGGAGGAATCCCCCTCCGATGCGCACTGAGAACCGTCTGATTGTAGAGAATCTTTCTTCAAGAGTGAGCTGGCAGGACTTGAAGGATTTTATGAGGCAGGCTGGAGAGGTTACCTTTGCTGATGCTCATCGCCCAAAGCTCAATGAGGGTGTGGTTGAGTTTGCCTCCCACAGTGATCTGAAAAATGCTCTGGAGAAGCTATCTGGGAAAGAAATCAATGGAAGGAAGATCAAGCTCATTGAGGCAGCCAGGAAAAAGTCCAGAAGTCGCTCCAGGTCCAACAGCTCATCCCGTTCCCGTTCTCGTAGTCGCACGCCATCCCGCAGCCCCAAAGCCCACAAACGCTCGCGCAGCCGATCCTCAACCCCCTCACCCTCCCCCACCCAAAGAGCTAAGGAGACGAAGCGGGCCCGTTCAGAATCCAGATCTCCCCCACCCCAGCGGGCCCCAGCCTCTCGCTCTCCATCCACCGACAGCCGCTGCTGAAGCAGCTCCACCCATCCCGCTGAAGCTTCACTCTTCGGTCAGACACTGTTGGTCACGCTTGTGTTTGTTTAGCATCTGTTCCAAACTGGCGTTTCAACCCTTGTGAGCGACGGGACAGATTTAATATCTTTACAGCCACTGATAGCAGCAGTGACCTCGAGTCTGAAGCCTGCTGTGCACTCACAGTCTTCAGAGGTAAATTCATGTCCGTAGACAGAGCTGCAGTTTTCTACTGTTCTCGGTAAGCTTTGCGTTTGTGTCCTCTGAGTAGTGTCACATTTCCCCTGAATGAGAGCTGTGATCTTGCTAGTAATATTAATAGGTGAGtaccttttttatattaatttgtgCTTTTAGTCATTGTGTAACAGGAAACATTCAAATGCTGTTGTGGCACCTTGCATACTTCAAGCAaatgttgtgtgtttgttttatgtttcatCAGTCAAATATAATTTTCGTTTCACTTGATAGCGCTGAAATTGAGGACCTTGTTTAATAAATTGGTGCaagtttaaacatgttttaataattgTGTGGAATTTGgaattgtatgttttatttcagcATCAATATGGGTGTTGGCATAAAGGGTTTTGATGCATGCCACCTGACTGGGAATTGTCTGTCATTTTCTTATACTCTTCTACTGTAAACAAACCTTTCAATATCATTGGACATTGATTTGAATTCATGTATTACCAAATAAACTCACAAGAATCCAAA

Function

symbol description
srsf5b Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).
srsf5 Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within response to wounding. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of breast cancer; clear cell renal cell carcinoma; and colon adenocarcinoma.

NR:

description
serine/arginine-rich splicing factor 5

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38445 True 2995 TUCP 0.47 7 56232739 56239729
XM_007232922.3 False 1631 mRNA 0.48 8 56232783 56239722

Neighbor

gene id symbol gene type direction distance location
susd6 susd6 coding upstream 5710 56192379 ~ 56227029 (+)
LOC103042812 zbtb2,zbtb2b,LOC103042812,LOC108424498 coding upstream 283789 55936150 ~ 55948950 (+)
LOC103034817 LOC108424415 coding upstream 344063 55666605 ~ 55888676 (+)
nrbp1 nrbp1,LOC107659221,LOC107737320,LOC107665360,LOC103372645 coding upstream 617264 55599802 ~ 55615475 (+)
LOC103046183 NA coding upstream 657895 55565611 ~ 55574844 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding downstream 21907 56261636 ~ 56274328 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding downstream 246771 56486500 ~ 56635493 (+)
pigh pigh coding downstream 484651 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 519977 56759706 ~ 56765799 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding downstream 527540 56767269 ~ 56819436 (+)
G28637 NA non-coding upstream 4879 56214451 ~ 56227860 (+)
G28633 NA non-coding upstream 42456 56190067 ~ 56190283 (+)
G28632 NA non-coding upstream 42904 56189606 ~ 56189835 (+)
G28631 NA non-coding upstream 43270 56189253 ~ 56189469 (+)
G28629 NA non-coding upstream 43985 56188505 ~ 56188754 (+)
G28654 NA non-coding downstream 74309 56314038 ~ 56314756 (+)
G28702 NA non-coding downstream 362760 56602489 ~ 56602883 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding downstream 580861 56820590 ~ 56823036 (+)
G28805 NA non-coding downstream 584959 56824688 ~ 56824999 (+)
G28807 NA non-coding downstream 589892 56829621 ~ 56830017 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 829409 55380604 ~ 55403330 (+)
G28072 NA other upstream 1853433 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 2579009 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 2579801 53652857 ~ 53652938 (+)
trnas-uga_10 NA other upstream 2580150 53652508 ~ 53652589 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other downstream 51018 56290747 ~ 56312111 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 97427 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 456115 56695844 ~ 56706092 (+)
G28865 NA other downstream 1162196 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 1563162 57802891 ~ 57812488 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) slc10a1 slc10a1,LOC107668231,LOC107671779,LOC107756602,LOC107721315 misc NC_056718.1 CM032087.1 15003410 ~ 15015372 (+)