LOC103033217 (rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855)


Basic Information

Item Value
gene id LOC103033217
gene name rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56290747 ~ 56312111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38475
GGCTGAGAGCATCCCTGATCACCGCACCCTTCACTCagggctgctgctgccgctgctctGCTCCACTTTCTCCGTGAGCTCGGCGGCTCTTCAGGCTTATTATCACAGGAGCGGCTGGTCTGTGGAAGGAGCGAGAAGGTTTGTGTAGTCAGTCTGCAGACATGGGCTGGAGCTGCTCTGCTGGGAATCCGCCGCTGCTCTAGCATAACCGCTCCTACACGACATCATGGCCAAGCAGTACGATGTTCTGTTCAGACTGCTGCTGCTCGGAGACTCCGGCGTGGGGAAGACCTGCCTGTTATGCAGATTTACCGACAACGAGTTCCATCCTTCTCACATATCCACCATCGGGgtggattttaaaatgaagacgCTAGAGATAGATGGCATCAAAGTAAGAATACAGATATGGGACACAGCAGGCCAGGAGAGATATCAGACCATCTCTAAGCAGTACTACAGACGAGCACAGG
>XM_007231520.3
GGGGAGACTGGCTGAGAGCATCCCTGATCACCGCACCCTTCACTCagggctgctgctgccgctgctctGCTCCACTTTCTCCGTGAGCTCGGCGGCTCTTCAGGCTTATTATCACAGGAGCGGCTGGTCTGTGGAAGGAGCGAGAAGGTTTGTGTAGTCAGTCTGCAGACATGGGCTGGAGCTGCTCTGCTGGGAATCCGCCGCTGCTCTAGCATAACCGCTCCTACACGACATCATGGCCAAGCAGTACGATGTTCTGTTCAGACTGCTGCTGCTCGGAGACTCCGGCGTGGGGAAGACCTGCCTGTTATGCAGATTTACCGACAACGAGTTCCATCCTTCTCACATATCCACCATCGGGgtggattttaaaatgaagacgCTAGAGATAGATGGCATCAAAGTAAGAATACAGATATGGGACACAGCAGGCCAGGAGAGATATCAGACCATCTCTAAGCAGTACTACAGACGAGCACAGGGAATCTTTCTGGTGTATGACATCACGAGTGAGCGCTCCTTTCAGCACATCATGAAATGGGCCAGTGATGTAGATGAGTATGCTCCTGACAAAGTGCAGAGAATTCTCGTTGGGAACAAGTCTGATGAGGAACAGAAAAGACAAGTGGCCACAGCACAGGGAGACAAGCTTGCTAAAGCTTATGGAATGGACTTTTATGAGACAAGTGCCTTTACCAATCATAACATTACAGAGTCTTTTACCCGACTGGCTGAGCTGGTCTTGCAGGCCAATAAAAAGGACCTTGATCTCCTGCGGGTTTCCATCAATGACAAGCTCAGTCTTGGAGCCCTTGAAGAGGATGAGGGAGTGTGTGACAGCAGTGATGCCCAAAAGGCCTGCTGGTGCTGAGGATTGGACTGGAGGTCGCtgcaacatgttttattttcagacTGACCTTGTGTTACTGTTGGACTTTTTTTCCAGTGCCACCATTGCTAATTTTATTGTTTGGTGCCTTCCAGTTGATCACATATTGAATGAAGACAAAAATCACATGCCTCTGAAGCCGTGGTTCAATTTTAAAAGAAGTTTTAAACCGATTTTCTTTAAACGACTGTTGGATAGATTGCCAATATGGTAAATGAAAGTG

Function

symbol description
rab15 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; protein localization to plasma membrane; and secretion by cell. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB15 (RAB15, member RAS oncogene family).

NR:

description
ras-related protein Rab-15

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07908 RAB15; Ras-related protein Rab-15

RNA

RNA id representative length rna type GC content exon number start site end site
TU38475 False 473 TUCP 0.41 3 56290756 56303210
XM_007231520.3 True 1112 mRNA 0.48 7 56290747 56312111

Neighbor

gene id symbol gene type direction distance location
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding upstream 16419 56261636 ~ 56274328 (+)
susd6 susd6 coding upstream 63718 56192379 ~ 56227029 (+)
LOC103042812 zbtb2,zbtb2b,LOC103042812,LOC108424498 coding upstream 341797 55936150 ~ 55948950 (+)
LOC103034817 LOC108424415 coding upstream 402071 55666605 ~ 55888676 (+)
nrbp1 nrbp1,LOC107659221,LOC107737320,LOC107665360,LOC103372645 coding upstream 675272 55599802 ~ 55615475 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding downstream 174389 56486500 ~ 56635493 (+)
pigh pigh coding downstream 412269 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 447595 56759706 ~ 56765799 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding downstream 455158 56767269 ~ 56819436 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding downstream 903233 57215344 ~ 57284784 (+)
G28637 NA non-coding upstream 62887 56214451 ~ 56227860 (+)
G28633 NA non-coding upstream 100464 56190067 ~ 56190283 (+)
G28632 NA non-coding upstream 100912 56189606 ~ 56189835 (+)
G28631 NA non-coding upstream 101278 56189253 ~ 56189469 (+)
G28629 NA non-coding upstream 101993 56188505 ~ 56188754 (+)
G28654 NA non-coding downstream 1927 56314038 ~ 56314756 (+)
G28702 NA non-coding downstream 290378 56602489 ~ 56602883 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding downstream 508479 56820590 ~ 56823036 (+)
G28805 NA non-coding downstream 512577 56824688 ~ 56824999 (+)
G28807 NA non-coding downstream 517510 56829621 ~ 56830017 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 51018 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 887417 55380604 ~ 55403330 (+)
G28072 NA other upstream 1911441 54378241 ~ 54379306 (+)
trnas-aga_8 NA other upstream 2637017 53653649 ~ 53653730 (+)
trnas-aga_7 NA other upstream 2637809 53652857 ~ 53652938 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other downstream 25045 56337156 ~ 56453934 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other downstream 383733 56695844 ~ 56706092 (+)
G28865 NA other downstream 1089814 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 1490780 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 2105283 58417394 ~ 58418817 (+)

Expression


Co-expression Network