G28657 (srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313)


Basic Information

Item Value
gene id G28657
gene name srsf5,LOC103029514,LOC107756601,LOC107549086,LOC107602033,LOC107721313
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56232707 ~ 56239723 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38478
GTTTGGATTCTTGTGAGTTTATTTGGTAATACATGAATTCAAATCAATGTCCAATGATATTGAAAGGTTTGTTTACAGTAGAAGAGTATAAGAAAATGACAGACAATTCCCAGTCAGGTGGCATGCATCAAAACCCTTTATGCCAACACCCATATTGATgctgaaataaaacatacaattcCAAATTCCACAcaattattaaaacatgtttaaacttGCACCAATTTATTAAACAAGGTCCTCAATTTCAGCGCTATCAAGTGAAACGAAAATTATATTTGACTGatgaaacataaaacaaacacacaacattTGCTTGAAGTATGCAAGGTGCCACAACAGCATTTGAATGTTTCCTGTTACACAATGACTAAAAGcacaaattaatataaaaaaggtaCTCACCTATTAATATTACTAGCAAGATCACAGCTCTCATTCAGGGGAAATGTGACACTACTCAGAGGACACAAACGCAAAGCTTACCGAGAACAGTAGAAAACTGCAGCTCTGTCTACGGACATGAATTTACCTCTGAAGACTGTGAGTGCACAGCAGGCTTCAGACTCGAGGTCACTGCTGCTATCAGTGGCTGTAAAGATATTAAATCTGTCCCGTCGCTCACAAGGGTTGAAACGCCAGTTTGGAACAGATGCTAAACAAACACAAGCGTGACCAACAGTGTCTGACCGAAGAGTGAAGCTTCAGCGGGATGGGTGGAGCTGCTTCAGCAGCGGCTGTCGGTGGATGGAGAGCGAGAGGCTGGGGCCCGCTGGGGTGGGGGAGATCTGGATTCTGAACGGGCCCGCTTCGTCTCCTTAGCTCTTTGGGTGGGGGAGGGTGAGGGGGTTGAGGATCGGCTGCGCGAGCGTTTGTGGGCTTTGGGGCTGCGGGATGGCGTGCGACTACGAGAACGGGAACGGGATGAGCTGTTGGACCTGGAGCGACTTCTGGACTTTTTCCTGGCTGCCTCAATGAGCTTGATCTTCCTTCCATTGATTTCTTTCCCAGATAGCTTCTCCAGAGCATTTTTCAGATCACTGTGGGAGGCAAACTCAACCACACCCTCATTGAGCTTTGGGCGATGAGCATCAGCAAAGGTAACCTCTCCAGCCTGCCTCATAAAATCCTTCAAGTCCTGCCAGCTCACTCTTGAAGAAAGATTCTCTACAATCAGACGGTTCTCAGTGCGCATCGGAGGGGGATTCCTCCGGCTATCCTGTGAGCCACGGCCATAACGATCTGGGAAGCGTCCTCCGCCTCCCCGACCCCTGCCTCCACGCAGGCGGACCCGTGCGTGTTCTATAGTCACCctCTCATTGCACAGCTCTTTCCCATCAAGCTCATATACAGCATCCTCAGCATCTCTCGGATCGTCAAACTCCACAAACCCGAAGCCTCTCTTTAGGTCGATGTCTCTGATCCTCCCGTAGCCCTTGAAGAAGCGCTCAACGTCCTTCTCCCTGGCGGAGGGATTCAGCCGCCCGATGAATATACGACAGCCGCTCATGATCCACAAACAGAGgcCTTCCCTGCACTTCACACGGCAGTGTAAGAGATCAGCTGCTGATCAACGACGACTCACAAAATGGCGTCAGAGCGAGGAAACAGCGGAGTGTCCTCCAGCTACTAAAACACAGCGAGGGGCGGGGGGAGGGtcacacactactacaacaacCACCTCAGATCACCAATAAGCACACTGTTA

Function

symbol description
srsf5 Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within response to wounding. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of breast cancer; clear cell renal cell carcinoma; and colon adenocarcinoma.

NR:

description
serine/arginine-rich splicing factor 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38478 True 1708 lncRNA 0.44 8 56232707 56239723

Neighbor

gene id symbol gene type direction distance location
LOC103032431 LOC108424505 coding downstream 44852 56173457 ~ 56187855 (-)
gpr176 gpr176 coding downstream 61904 56153714 ~ 56170803 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107665399 coding downstream 107147 56055205 ~ 56125560 (-)
LOC103043128 NA coding downstream 189422 55949627 ~ 56043285 (-)
armt1 armt1 coding downstream 301521 55924510 ~ 55931186 (-)
LOC103029201 LOC103029201 coding upstream 1248 56240971 ~ 56252577 (-)
LOC103033540 fntb,LOC108424508,LOC107668263,LOC107756604,LOC107721314,LOC107671778,LOC103359368 coding upstream 34763 56274486 ~ 56289838 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 472894 56712617 ~ 56723774 (-)
rhov rhov,LOC107602886,LOC107659156,LOC107668201,LOC107562688,LOC107721274 coding upstream 515666 56755389 ~ 56758766 (-)
chac1 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 coding upstream 580762 56820485 ~ 56823051 (-)
G28661 NA non-coding downstream 4853 56214544 ~ 56227854 (-)
G28634 NA non-coding downstream 42018 56190489 ~ 56190689 (-)
G28617 NA non-coding downstream 84969 56147176 ~ 56147738 (-)
G28606 NA non-coding downstream 102975 56129195 ~ 56129732 (-)
G28604 NA non-coding downstream 106183 56126157 ~ 56126524 (-)
G28728 LOC108415780 non-coding upstream 247490 56487213 ~ 56509688 (-)
LOC111189610 NA non-coding upstream 348971 56588694 ~ 56614067 (-)
G28813 NA non-coding upstream 584973 56824696 ~ 56825001 (-)
G28823 NA non-coding upstream 770754 57010477 ~ 57010707 (-)
G28938 NA non-coding upstream 1523778 57763501 ~ 57764257 (-)
G28536 NA other downstream 416109 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 591332 55634532 ~ 55641375 (-)
G28501 nrbp1,LOC103372645,LOC105015343,LOC106537236,LOC102314540 other downstream 625821 55602870 ~ 55606886 (-)
LOC111189318 NA other downstream 730947 55499900 ~ 55501760 (-)
mixl1 lin9,LOC107678835,LOC107726751,LOC107697095 other downstream 788038 55432081 ~ 55444669 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other upstream 400628 56640351 ~ 56694835 (-)
ppp4r4 ppp4r4,LOC107711657 other upstream 1572539 57812262 ~ 57841318 (-)
LOC103041090 LOC103041090,LOC108424449 other upstream 1751918 57991641 ~ 57995476 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 1919484 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 2693240 58932963 ~ 58934789 (-)

Expression


Co-expression Network