dcaf4 (dcaf4,LOC107602090,LOC107659175,LOC107562700)


Basic Information

Item Value
gene id dcaf4
gene name dcaf4,LOC107602090,LOC107659175,LOC107562700
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56695844 ~ 56706092 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38591
GGGGTGTTCGCTGAGCCACACGAGGAAACGCCGCTGTCCGAGGCAGGAAGTACAATACccgtgtgtgtttgtttatgtgaGCGGGTGAAGAAGTTGTTTGGTGGAAAACAGTCACACTCGGGAATAAAACAGCgagttaaagagttaaagtgAGGCTTAAAGTGTGCGGAATCTGTGGAACCAAGCTAAAAAACATGGGCTGCCACGTGTACTACCACTAGCTACGTGGTAGTCGTTTAGGTGCTAGCAGGCTAGCTgactgactagctaacctatctaTCCTATTCaatgtagctaactaagttcGCTAATGCTCAGACGTGCCTTATCCATGTTTCTTCATGGTCAGCGGGCTGGACGTGTGAGCTTGTAGCTGTTCTTACCTCAGTGCCTCTCATTACATATGAATACGAGAAATGGGGAGACGAAATTGGCGAGGAAGGGGAAAACACCAGCTTCACCATCATTATCGTCGAGCAGACTGGAGGAGAGATCATTCCACTGGCAGAAGTCACGAGGATGGCTGGGACAGTACAACAGCGGGGCCTTCTCCCAGAGCAGCAGAGACCAGTTCAGACCAAGACACTGCTTCCTCATCAAGAGCCCCTGCAGCTGCTCCAGG
>XM_022663297.1
AGTAGGCGGGGTGTTCGCTGAGCCACACGAGGAAACGCCGCTGTCCGAGGCAGGAAGTACAATACccgtgtgtgtttgtttatgtgaGCGGGTGAAGAAGTTGTTTGGTGGAAAACAGTCACACTCGGGAATAAAACAGCgagttaaagagttaaagtgAGGCTTAAAGTGTGCGGAATCTGTGGAACCAAGCTAAAAAACATGGGCTGCCACGTGTACTACCACTAGCTACGTGGTAGTCGTTTAGGTGCTAGCAGGCTAGCTgactgactagctaacctatctaTCCTATTCaatgtagctaactaagttcGCTAATGCTCAGACGTGCCTTATCCATGTTTCTTCATGGTCAGCGGGCTGGACGTGTGAGCTTGTAGCTGTTCTTACCTCAGTGCCTCTCATTACATATGAATACGAGAAATGGGGAGACGAAATTGGCGAGGAAGGGGAAAACACCAGCTTCACCATCATTATCGTCGAGCAGACTGGAGGAGAGATCATTCCACTGGCAGAAGTCACGAGGATGGCTGGGACAGTACAACAGCGGGGCCTTCTCCCAGAGCAGCAGAGACCAGTTCAGACCAAGACACTGCTTCCTCATCAAGAGCCCCTGCAGCTGCTCCAGAGTTGCCAGGGTTCTACTTTGACCCAGAGAAAAATCGCTACTTCCGGCTTTTGCCTGGTCACAACAACTGCAATCCATTAACAAAGGAGATGCTGGACATGAAGGAGCAAGAGAAGAAGCGGTCCAGGCTGCTTGAGGAGGATGAGCAGCCGATTAAGAAAGCTCCTCGGACTGGGCTTAACACTGCATTGCTGTTGCAGAGGCGGCATCTGGGCCTGCTGTCTCCAAGCTCTTATAGCAGGCTGGTCCATGAGGTGAAGGTCAGTGAGATGAAGCGTCACAAACTGGAGGTGCAGAGCTCTGACTCAAGCTGCCCGAATACTGACAACTTTTGCCTTATTGTGGCAGACTCGTCTTGTGAGCAGGTGTTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTACGGCATTATGAACTTCCGTGGCTGCAGGAAGGGCTCTCTGTCTGTGGAGATGTGTGATAACCTTTACTTCACTAATCGCAAGGTGAATTCTGTGTGCTGGGCTTCTGTAACTCATTCAGACTCTCACGTCCTATTGTGTTTAGTGGGTATATCTCAGACTCCAGGCTGCGTCAGTTTATTGCCTGCTTCTCTGTTCAGTAACTCCAATCCTGaCCAGCCTGGAATGCTTTGCAGCTTTAAGATCTCTACAGCCTGGTCTTGTGCCTGGTGCCTGAATCCACAGGCAGATAAAACCTTCAGTACCGGTCTTTCGCGGCATGTCATTGTGACGGATGCGGTGACGGGCCGAAGACAGATGTACGGCACTGGCAGTGATGTTCTGGCTCAGCAGTTTGCACTTAGAGCTCCTGTGCTCTTTAATGGCTGTCGTTCGGGGGAAATCTTCAGCATTGACCTGAGGCAGCGCGGCAGAGGACGGGATCACAGCTGGAAAACCTGCCGCTTCTATCAGGACTCTGCCGTGACCTCCGTCCGTCTCCTGCAGGATGAAAACTACCTCCTTGCTGCTGATATGCTGGGAAAGATTAAGCTGTGGGACATTCGTGTAAGACGGTCAGTAAAGCAGTATGAAGGTCACCACAATGAGTACGCCTATCTGCCTCTTCACCTTAGTGAGCAAGAGGGGCTGCTGCTAGcagTGGGCCAGGACTGCTACACCCGTCTCTGGAGTCTTAGCGATGGGCATCTTCTCAGGACCATCCCCTCTCCACACCCTGCAGGGAAAGACTCCATTCCCAACGTAGTTTTCTCCTCCCAACTCGGAGGCCGCAGAGGACTGCCCGGCCTTTTAATGGCCGTCCGACATGATCTCTATTACTACCCGTATAACAGTGACTACCAAGATGGAGCAGTAACACCTGAAGGACAAGGCTAGCTGGTGCACACTCAGCACTTCTTCCATGACTGGCAGGAAAAGCTGGTGTATTGTCTGTCATCATATATATTGAACAAAAAGAGACAATTCAATTAACTGTTAATCAAATGATCTGTTGCGATGCAAAAACCAGCTATGACTTATGAAATATAATGTTCTTTACTTAATTTGTCCCAGTTCTTGGGGCATAGGCAAAGCGTCTTAAGAAACACCATAGTTATAAAATGGGTTGATATATTTTCTTCCATTTAAAGTTCTGTAAGCGTGGgtgctccttttttttttttacctcaaagTGCAATTTCAGGCTGAAGGACTAAAGGAGGACTGTGCTTCAGATGTGTTATTTTGCAGTGAACTTGCTTTGTATACTCTTTGTAAGATGAGAACAAATTAGCACCcatgaaatatatatgtaacaacaataaaaacatactaCAGAACGAGAACCAGCATTTACATTTCATGATAAGTGGTTGATTGTAGTAGGTGATAGTGGAGAATTTGGTCTTCCTCTAAATCAGTGGTTTTCTAATTGATCCTCAGAAACTCCCTAAAcgtcttattttagtttattcatTAAATTTTATTTGCTCCAACCCCACAAAATCATGCACTACTTTAGGCTCCATAAGAACTGGTGTGATAAGAATGGCTCGAAATAAAATCTGTAGAAAAGTT
>XM_022663300.1
GGATTGTGTCATTAtctgtaatgtgttttgttgATGTGCAGCTGGGACAGTACAACAGCGGGGCCTTCTCCCAGAGCAGCAGAGACCAGTTCAGACCAAGACACTGCTTCCTCATCAAGAGCCCCTGCAGCTGCTCCAGAGTTGCCAGGGTTCTACTTTGACCCAGAGAAAAATCGCTACTTCCGGCTTTTGCCTGGTCACAACAACTGCAATCCATTAACAAAGGAGATGCTGGACATGAAGGAGCAAGAGAAGAAGCGGTCCAGGCTGCTTGAGGAGGATGAGCAGCCGATTAAGAAAGCTCCTCGGACTGGGCTTAACACTGCATTGCTGTTGCAGAGGCGGCATCTGGGCCTGCTGTCTCCAAGCTCTTATAGCAGGCTGGTCCATGAGGTGAAGGTCAGTGAGATGAAGCGTCACAAACTGGAGGTGCAGAGCTCTGACTCAAGCTGCCCGAATACTGACAACTTTTGCCTTATTGTGGCAGACTCGTCTTGTGAGCAGGTGTTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTACGGCATTATGAACTTCCGTGGCTGCAGGAAGGGCTCTCTGTCTGTGGAGATGTGTGATAACCTTTACTTCACTAATCGCAAGGTGAATTCTGTGTGCTGGGCTTCTGTAACTCATTCAGACTCTCACGTCCTATTGTGTTTAGTGGGTATATCTCAGACTCCAGGCTGCGTCAGTTTATTGCCTGCTTCTCTGTTCAGTAACTCCAATCCTGaCCAGCCTGGAATGCTTTGCAGCTTTAAGATCTCTACAGCCTGGTCTTGTGCCTGGTGCCTGAATCCACAGGCAGATAAAACCTTCAGTACCGGTCTTTCGCGGCATGTCATTGTGACGGATGCGGTGACGGGCCGAAGACAGATGTACGGCACTGGCAGTGATGTTCTGGCTCAGCAGTTTGCACTTAGAGCTCCTGTGCTCTTTAATGGCTGTCGTTCGGGGGAAATCTTCAGCATTGACCTGAGGCAGCGCGGCAGAGGACGGGATCACAGCTGGAAAACCTGCCGCTTCTATCAGGACTCTGCCGTGACCTCCGTCCGTCTCCTGCAGGATGAAAACTACCTCCTTGCTGCTGATATGCTGGGAAAGATTAAGCTGTGGGACATTCGTGTAAGACGGTCAGTAAAGCAGTATGAAGGTCACCACAATGAGTACGCCTATCTGCCTCTTCACCTTAGTGAGCAAGAGGGGCTGCTGCTAGcagTGGGCCAGGACTGCTACACCCGTCTCTGGAGTCTTAGCGATGGGCATCTTCTCAGGACCATCCCCTCTCCACACCCTGCAGGGAAAGACTCCATTCCCAACGTAGTTTTCTCCTCCCAACTCGGAGGCCGCAGAGGACTGCCCGGCCTTTTAATGGCCGTCCGACATGATCTCTATTACTACCCGTATAACAGTGACTACCAAGATGGAGCAGTAACACCTGAAGGACAAGGCTAGCTGGTGCACACTCAGCACTTCTTCCATGACTGGCAGGAAAAGCTGGTGTATTGTCTGTCATCATATATATTGAACAAAAAGAGACAATTCAATTAACTGTTAATCAAATGATCTGTTGCGATGCAAAAACCAGCTATGACTTATGAAATATAATGTTCTTTACTTAATTTGTCCCAGTTCTTGGGGCATAGGCAAAGCGTCTTAAGAAACACCATAGTTATAAAATGGGTTGATATATTTTCTTCCATTTAAAGTTCTGTAAGCGTGGgtgctccttttttttttttacctcaaagTGCAATTTCAGGCTGAAGGACTAAAGGAGGACTGTGCTTCAGATGTGTTATTTTGCAGTGAACTTGCTTTGTATACTCTTTGTAAGATGAGAACAAATTAGCACCcatgaaatatatatgtaacaacaataaaaacatactaCAGAACGAGAACCAGCATTTACATTTCATGATAAGTGGTTGATTGTAGTAGGTGATAGTGGAGAATTTGGTCTTCCTCTAAATCAGTGGTTTTCTAATTGATCCTCAGAAACTCCCTAAAcgtcttattttagtttattcatTAAATTTTATTTGCTCCAACCCCACAAAATCATGCACTACTTTAGGCTCCATAAGAACTGGTGTGATAAGAATGGCTCGAAATAAAATCTGTAGAAAAGTT

Function

symbol description
dcaf4 Predicted to be involved in protein ubiquitination. Part of Cul4-RING E3 ubiquitin ligase complex.

NR:

description
PREDICTED: DDB1- and CUL4-associated factor 4

GO: NA

KEGG:

id description
K11799 DCAF4; DDB1- and CUL4-associated factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU38591 False 622 lncRNA 0.47 2 56695851 56697851
XM_022663297.1 True 2649 mRNA 0.47 13 56695844 56706092
XM_022663300.1 False 2160 mRNA 0.47 12 56698859 56706092

Neighbor

gene id symbol gene type direction distance location
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding upstream 60351 56486500 ~ 56635493 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding upstream 421516 56261636 ~ 56274328 (+)
susd6 susd6 coding upstream 468815 56192379 ~ 56227029 (+)
LOC103042812 zbtb2,zbtb2b,LOC103042812,LOC108424498 coding upstream 746894 55936150 ~ 55948950 (+)
LOC103034817 LOC108424415 coding upstream 807168 55666605 ~ 55888676 (+)
pigh pigh coding downstream 18288 56724380 ~ 56731338 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding downstream 53614 56759706 ~ 56765799 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding downstream 61177 56767269 ~ 56819436 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding downstream 509252 57215344 ~ 57284784 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding downstream 699659 57405751 ~ 57407393 (+)
G28702 NA non-coding upstream 92961 56602489 ~ 56602883 (+)
G28654 NA non-coding upstream 381088 56314038 ~ 56314756 (+)
G28637 NA non-coding upstream 467984 56214451 ~ 56227860 (+)
G28633 NA non-coding upstream 505561 56190067 ~ 56190283 (+)
G28632 NA non-coding upstream 506009 56189606 ~ 56189835 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding downstream 114498 56820590 ~ 56823036 (+)
G28805 NA non-coding downstream 118596 56824688 ~ 56824999 (+)
G28807 NA non-coding downstream 123529 56829621 ~ 56830017 (+)
G28822 NA non-coding downstream 304385 57010477 ~ 57010719 (+)
G28833 NA non-coding downstream 412404 57118496 ~ 57118723 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 241910 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 383733 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 456115 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 1292514 55380604 ~ 55403330 (+)
G28072 NA other upstream 2316538 54378241 ~ 54379306 (+)
G28865 NA other downstream 695833 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 1096799 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1711302 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 2358381 59064473 ~ 59112315 (+)
G29382 NA other downstream 2514440 59220532 ~ 59221036 (+)

Expression


Co-expression Network