G28807


Basic Information

Item Value
gene id G28807
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 56829621 ~ 56830017 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38693
accttatattgaggtacaaaaaagtacctttcagtgaaagtccttttttgtacccatggtttttgtagcagtaaagatcataaagattataaacattatcatcaactaaatatggctcaaaaacttgatgatacaaaattgtctggctttcaaataaaaaaatgtgcaatttaaatatatattgtttattagtacagtgatgcagaatactgaatgtaccctttggctggttaaatggtacaaatttgtacttattgctgttaggaatgactttgtacttcagagggaacaaatctgaccctgtaaagaccaatattgtacctttgagggtacaattatgaagagtgtaccttcgagtacaaaaaagtactcatgtcgtacctctgttttttagagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38693 True 397 lncRNA 0.32 1 56829621 56830017

Neighbor

gene id symbol gene type direction distance location
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 10185 56767269 ~ 56819436 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding upstream 63822 56759706 ~ 56765799 (+)
pigh pigh coding upstream 98283 56724380 ~ 56731338 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding upstream 194128 56486500 ~ 56635493 (+)
max max,LOC107668248,LOC107721316,LOC107671780,LOC108269635 coding upstream 555293 56261636 ~ 56274328 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding downstream 385327 57215344 ~ 57284784 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding downstream 575734 57405751 ~ 57407393 (+)
zbtb25 zbtb25 coding downstream 603137 57433154 ~ 57438015 (+)
LOC103047529 NA coding downstream 948188 57778205 ~ 57788035 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 965375 57795392 ~ 57800871 (+)
G28805 NA non-coding upstream 4622 56824688 ~ 56824999 (+)
G28776 chac1,LOC107721326,LOC107739370,LOC107659180,LOC107668209 non-coding upstream 6585 56820590 ~ 56823036 (+)
G28702 NA non-coding upstream 226738 56602489 ~ 56602883 (+)
G28654 NA non-coding upstream 514865 56314038 ~ 56314756 (+)
G28637 NA non-coding upstream 601761 56214451 ~ 56227860 (+)
G28822 NA non-coding downstream 180460 57010477 ~ 57010719 (+)
G28833 NA non-coding downstream 288479 57118496 ~ 57118723 (+)
G28864 NA non-coding downstream 567931 57397948 ~ 57398221 (+)
G28872 NA non-coding downstream 620193 57450210 ~ 57516305 (+)
G28955 NA non-coding downstream 960234 57790251 ~ 57790951 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 123529 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 375687 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 517510 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 589892 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 1426291 55380604 ~ 55403330 (+)
G28865 NA other downstream 571908 57401925 ~ 57402392 (+)
LOC103042006 NA other downstream 972874 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1587377 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 2234456 59064473 ~ 59112315 (+)
G29382 NA other downstream 2390515 59220532 ~ 59221036 (+)

Expression


Co-expression Network