G28865


Basic Information

Item Value
gene id G28865
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57401925 ~ 57402392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38768
TTGAAATGTAGCTACGGAAAAACACTCAATCAGAATATTTCACAAAGCAGTTAAACTACTTGAAGAGAGGAGGAACatgaaatccacaaaaatcTCCAATACTCAGCCAATACCCTCTCCTACCCCTTccaaacaaatgcagaaaagtacatgcAATAAGAAAATGcaccactgctcagactgtgggaagagttttagttaTCAGGGttatctcaaaaaacaccagcacattcacactggagagaaaccgtatcactgctcagactgtgggaagagttttaatcaacagtgtaatctcaaaacacaccagcgcattcacactggagagaaaccgtatcactgctcagactgtgggaagagttttagccATCAGAGTCATCTCCaacgacaccagcgcattcacacggAAGAGAAACTGTATCACGggtcagactgtgggaagagttttaatcaacagactATTCTCCA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU38768 True 468 TUCP 0.42 1 57401925 57402392

Neighbor

gene id symbol gene type direction distance location
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding upstream 117141 57215344 ~ 57284784 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 582489 56767269 ~ 56819436 (+)
vps18 vps18,LOC107739368,LOC107602125,LOC107659178,LOC107668247 coding upstream 636126 56759706 ~ 56765799 (+)
pigh pigh coding upstream 670587 56724380 ~ 56731338 (+)
LOC103032052 rgs6,LOC108424512,LOC108257637,LOC107602058,LOC107659172,LOC107721319 coding upstream 766432 56486500 ~ 56635493 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding downstream 3359 57405751 ~ 57407393 (+)
zbtb25 zbtb25 coding downstream 30762 57433154 ~ 57438015 (+)
LOC103047529 NA coding downstream 375813 57778205 ~ 57788035 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 393000 57795392 ~ 57800871 (+)
LOC103042834 NA coding downstream 446075 57848467 ~ 57855123 (+)
G28864 NA non-coding upstream 3704 57397948 ~ 57398221 (+)
G28833 NA non-coding upstream 283202 57118496 ~ 57118723 (+)
G28822 NA non-coding upstream 391206 57010477 ~ 57010719 (+)
G28807 NA non-coding upstream 571908 56829621 ~ 56830017 (+)
G28805 NA non-coding upstream 576926 56824688 ~ 56824999 (+)
G28872 NA non-coding downstream 47818 57450210 ~ 57516305 (+)
G28955 NA non-coding downstream 387859 57790251 ~ 57790951 (+)
G29003 NA non-coding downstream 508934 57911326 ~ 57911593 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 658533 58060925 ~ 58076530 (+)
G29036 NA non-coding downstream 713593 58115985 ~ 58119141 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 695833 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 947991 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 1089814 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 1162196 56232739 ~ 56239729 (+)
LOC103023616 LOC108424481,LOC108257757 other upstream 1998595 55380604 ~ 55403330 (+)
LOC103042006 NA other downstream 400499 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 1015002 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1662081 59064473 ~ 59112315 (+)
G29382 NA other downstream 1818140 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 1818874 59221266 ~ 59228840 (+)

Expression


Co-expression Network