G28955


Basic Information

Item Value
gene id G28955
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 57790251 ~ 57790951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU38881
acacacagagacacgaaacagggctaagacctgacagaagcctccccctaaacgcgcagctcccgaggcgcgtaaaaacgaaccccgggggctggcggcggggagaggccggggaaaacaagagacgaaaccggggactgaaacggagacaggacagaggacagagactggacgggagactggacggggaactggacaggagacggagactggatggggaacggagactggacagggaactggacggtggacggagactggacaggagactggacggggaactggacagggaactggacggtggacggagactggacaggacacTGGGCAGGGGACGGAGATtgaacaggagactggacgggactggacatgggaacagggacgaggacattaacagggacagaaacaaacactgtaactgggacgggaacagagacagagacagacacgggtacagggacgtaaacagagacagggaccaaaacagggagagacatggggaccagaaacacgggtgggtgcccaggactggcaaatgtctgaggggaagtccaaggagccagcctgggcacagtactgggGACAAAGTCAGGGGacctcggtgcctgcctgggtacaTGGGACCTGGGACCAAACAAAGTTCCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38881 True 647 lncRNA 0.60 2 57790251 57790951

Neighbor

gene id symbol gene type direction distance location
LOC103047529 NA coding upstream 2216 57778205 ~ 57788035 (+)
zbtb25 zbtb25 coding upstream 352236 57433154 ~ 57438015 (+)
LOC103045802 inafm2,LOC106952300,LOC108165849 coding upstream 382858 57405751 ~ 57407393 (+)
LOC103046620 syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107668242 coding upstream 505467 57215344 ~ 57284784 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 coding upstream 970815 56767269 ~ 56819436 (+)
LOC103043365 LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 coding downstream 4441 57795392 ~ 57800871 (+)
LOC103042834 NA coding downstream 57516 57848467 ~ 57855123 (+)
LOC103041704 LOC108424533 coding downstream 68131 57859082 ~ 57875392 (+)
LOC103047227 NA coding downstream 87204 57878155 ~ 57889823 (+)
LOC103041400 si:dkey-85n7.6,LOC103041400,LOC108424448,LOC107659191,LOC107602279 coding downstream 129784 57920735 ~ 57968882 (+)
G28872 NA non-coding upstream 273946 57450210 ~ 57516305 (+)
G28864 NA non-coding upstream 392030 57397948 ~ 57398221 (+)
G28833 NA non-coding upstream 671528 57118496 ~ 57118723 (+)
G28822 NA non-coding upstream 779532 57010477 ~ 57010719 (+)
G28807 NA non-coding upstream 960234 56829621 ~ 56830017 (+)
G29003 NA non-coding downstream 120375 57911326 ~ 57911593 (+)
G29029 LOC108411326,LOC107721373,LOC108257828,LOC107659193 non-coding downstream 269974 58060925 ~ 58076530 (+)
G29036 NA non-coding downstream 325034 58115985 ~ 58119141 (+)
G29040 NA non-coding downstream 336911 58127862 ~ 58128360 (+)
G29033 NA non-coding downstream 351922 58142873 ~ 58144817 (+)
G28865 NA other upstream 387859 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 1084159 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 1336317 56337156 ~ 56453934 (+)
LOC103033217 rab15,LOC107668202,LOC107671782,LOC103457353,LOC106608154,LOC106571087,LOC104949855 other upstream 1478140 56290747 ~ 56312111 (+)
LOC103029514 srsf5,srsf5b,LOC103029514,LOC107756601,LOC107602033,LOC107549086,LOC107721313 other upstream 1550522 56232739 ~ 56239729 (+)
LOC103042006 NA other downstream 11940 57802891 ~ 57812488 (+)
G29155 foxq1 other downstream 626443 58417394 ~ 58418817 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 1273522 59064473 ~ 59112315 (+)
G29382 NA other downstream 1429581 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 1430315 59221266 ~ 59228840 (+)

Expression


Co-expression Network