G29108


Basic Information

Item Value
gene id G29108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58122464 ~ 58124565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39078
taattacaaAGGCCCagttaatacagtaaatagagGGAAACATCTTTATtacaaaccagaaaaaaaactttttttatttgaaaacatAAAACTGGTCATTTATAATTTTGTACCATGACATTGATCACAATTTAAAATTTCAACACATTGAAGTCACTACTGTACCCATGATCCTCTCCAtctgtaataaacagagggggaaccacttttcttaggtACTGGTTAAATATGTTCCCCACTGTGTTCTCAAAGTTGAAGAGGTATATAGAGAGAGTATtgttactgggtgaaatagtaatagacacacagtttatcagcataaatactgtacccataatcctctccagctgtaataaacagagggggaaccacttttcttaggttctggttaaatatgttcccccctgtgttctcagagataaagaggtatagagagattaaaagttactgggtgaaatagtaatagaTACACAGTTTATCAACATGATTAATGTACCCATAATCCTCTccagctgtaataaacagagggggaaccacttttcttaggttctGGAGAAATATGTTCCCCCCTGTGTTCTCAGAGATAAAGATGTATAGAGAGATTAAAGGTTACTGGGTTAAATCGTCATagacacacagtttatcagcatAAGTACTGTATCTGAATATCCCCACTAGCTTAACTAGCTAACCCATGTTCTCTTGATCCACTGGAAACAGTGGGatggattaaaaatataaacatttttaagacaCATTCAAGACACATTACtactct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39078 True 778 lncRNA 0.35 3 58122464 58124565

Neighbor

gene id symbol gene type direction distance location
tmem251 tmem251 coding downstream 38981 58081670 ~ 58083483 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding downstream 45899 58060823 ~ 58076565 (-)
LOC111194372 NA coding downstream 369321 57685492 ~ 57753143 (-)
LOC103043676 LOC108424526 coding downstream 467384 57607770 ~ 57655080 (-)
LOC103044195 NA coding downstream 631741 57450925 ~ 57490723 (-)
chga chga coding upstream 12044 58136609 ~ 58149747 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding upstream 51244 58175809 ~ 58189729 (-)
LOC103038188 LOC108411316 coding upstream 68063 58192628 ~ 58198200 (-)
LOC103037877 LOC108411323 coding upstream 86312 58210877 ~ 58222945 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding upstream 102641 58227206 ~ 58234274 (-)
G29085 NA non-coding downstream 65004 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 128351 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 245719 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 268706 57849734 ~ 57853758 (-)
G28960 prph2l,LOC108424527,LOC107569893,LOC107711660,LOC107665408,LOC107602225,LOC107721267 non-coding downstream 321593 57799062 ~ 57800871 (-)
LOC103035795 NA non-coding upstream 138679 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 188249 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 290599 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 396072 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 544729 58669294 ~ 58705165 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 126988 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 281146 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1427629 56640351 ~ 56694835 (-)
G28536 NA other downstream 2305866 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2481089 55634532 ~ 55641375 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other upstream 34642 58159207 ~ 58174704 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 808398 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 873976 58998541 ~ 59085886 (-)
G29478 NA other upstream 1313035 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1382361 59506926 ~ 59552910 (-)

Expression


Co-expression Network