G29131 (gmds,LOC107711642)


Basic Information

Item Value
gene id G29131
gene name gmds,LOC107711642
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58312814 ~ 58385453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39108
ACAGGATTTCACATGATGGTCCTATACAGATCTTTTTGTTAAGGAACAGTTTTCAGGTTACAGTAAAGCATTTTTTCATATAATCATATCATTTCATACTTGTTTTCTACAGCTTTGTCCCACTATTTCTTCTACAAATCtatgatttaattaaatataacctACACCTCCTCACCACGATTGCAATGGcagtaaaaaagaaatcttataaaaatggttaaaaatgatTTGATGGTAAAGACACTCAAGATTACAAATATATGCCAGTGTAAAGAAAATGGAATGTAAAAAGCAGCAAGTCTTCCTGTATTGAGAGGAACCGCAGGCAGAAGGACGGAGTGCTTGAAAAGAAAGATACTGAAACGTGCTCTTTCATGTATCAgaatctctctcactcactcacacactcacacacacacacacacacacacacacacacacagttcctcGGCATGTTGATGTGCTGCTATGACATGTGGGCTCATGCAGTCGGGTTATTCTTCATGAGTTCTATATCAGCATCCACCATCTCCTTCACCAGCTCCTCAAATGTAACCTGTGGCTTCCATCCAAGCAATTTCAGTGCTTTAGTGCTGTCACCCTGCAGATAGTcACTTCAGTAGGACGGTAGTACTTCGGGTCCACTCGAACATGGATTTCACCTGTCTCCTGACACCGGCCTACTTCTTTCTCATCCTTCCCTTCCCAACAATGGTCTTGCCCACATGCTTGAAAGCTCTCTCTACAAACTCCCGCACACTGTGCACTTCTCCTGTTGCAATGACGAAATCCTCTGGTTCCTTTTGCTGCAACATCAGCCACATGGcctCCACATAGTCTTTGGCATGTCCCCAGTCTCTCATGGAGTCTAGATTACCCAGGTTGAAGCACTGCAACTGGCCAAGATGGATCTTTGCCACTGAGCGACTGATTTTCCTGGTCACAAAGTTAGACCTCTGCGAGGGCTCTCGTGATTGAAAAGAATCCCATTCACAGCATAAAGATTATACGCCTCCCTGAAGTTCACCACTATCCAGTATGCATAGAGTTTAGCAGCACCATAAGGTGAGCGGGGGTAGAAGGGAGTGGTCTCTTTCTGTGGAATCTCCTGCACTTTGCCATAGAGCTCGCTGGTGGAGGCCTGGTAAAACTTCACAGTGTCTGTTAACCCACAAGTCTTTATTGCGTCCAACAACCGTAGAGTACCCACGCCGTCAACATCAGCGGTGTATTCTGCCAGGTCGAAGGAGAtCTTGACGTGGCTCTGAGCCCCCAGGTTGTAGATTTCTGTGGGTTTGACTTCATTGATAATTTTTACAAGGCAAGTGCTGTCGGTTAGATCTCCGTAGTGCAACTTCATGTaCCCTGGTGTTGACCCAGATCTTCCTTCAGTGTGTGTCTGAGGGTTATGGTAAAGGTGCTCAATTCGACCAGTGTTAAATGAACTGGACCTGCGAAGGATACCGTGAACCTCATAGCCTTTTTCCAGCAGAAACTCCGCCAAGTAGGAGCCATCCTGGCCGGTGATGCCGGTGATGATGGCGACCCTTCTGGACTTCCCCGCTTCACCGTTGCCGGCACAGGCTGCAGGTTTGGCGGCGCATTCAGCCatggtctgtctgtgtgtgtctgtactgGCTGTGTTTCGGTGCTGCTCGTCTCAGCTCTCGGGCTTCCCTTCTGTAACCGTCAACAGACGCGCGTGCTAAACCCTCACAACATCAGGAACTCGCTG
>TU39109
ACAGGATTTCACATGATGGTCCTATACAGATCTTTTTGTTAAGGAACAGTTTTCAGGTTACAGTAAAGCATTTTTTCATATAATCATATCATTTCATACTTGTTTTCTACAGCTTTGTCCCACTATTTCTTCTACAAATCtatgatttaattaaatataacctACACCTCCTCACCACGATTGCAATGGcagtaaaaaagaaatcttataaaaatggttaaaaatgatTTGATGGTAAAGACACTCAAGATTACAAATATATGCCAGTGTAAAGAAAATGGAATGTAAAAAGCAGCAAGTCTTCCTGTATTGAGAGGAACCGCAGGCAGAAGGACGGAGTGCTTGAAAAGAAAGATACTGAAACGTGCTCTTTCATGTATCAgaatctctctcactcactcacacactcacacactcacatacacacacacacacacacacacacacacacacacaaacacacgaatactaaaagtaaagaaatctcaacaacaaaaaaaagataaactttTTGTGATGTACACAGGGTTCCATGTTTAAAC
>TU39111
AACGAATGTTTACATTTGACAGAAAACACCCAAGGCACTGGCTAATTCCAAACTATATGCTGTTAAAGATCCAAAGATAAAACTAAGTTGAGTTGAGGATCATTTTGAGATGTGCACAAATGCAGAATATGGGGTGTGTGAGTTTTACTTACTTCCTTCAGTGTGTGTCTGAGGGTTATGGTAAAGGTGCTCAATTCGACCAGTGTTAAATGAACTGGACCTGCGAAGGATACCGTGAACCTCATAGCCTTTTTCCAGCAGAAACTCCGCCAAGTAGGAGCCATCCTGGCCGGTGATGCCGGTGATGATGGCGACCCTTCTGGACTTCCCCGCTTCACCGTTGCCGGCACAGGCTGCAGGTTTGGCGGCGCATTCAGCCatggtctgtctgtgtgtgtctgtactgGCTGTGTTTCGGTGCTGCTCGTCTCAGCTCTCGGGCTTCCCTTCTGTAACCGTCAACAGACGCGCGTGCTAAACCCTCACAACATCAGGAACTCGCTG

Function

symbol description
gmds Enables fucosyltransferase activity. Acts upstream of or within Notch signaling pathway; central nervous system development; and retina layer formation. Predicted to be active in cytoplasm. Is expressed in EVL; corneal epithelium; neuromast; and periderm. Used to study congenital disorder of glycosylation type IIc. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase).

NR:

description
PREDICTED: GDP-mannose 4,6 dehydratase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39108 True 1735 lncRNA 0.32 12 58321038 58385453
TU39109 False 542 lncRNA 0.54 3 58312814 58385453
TU39111 False 504 lncRNA 0.50 3 58321038 58330972

Neighbor

gene id symbol gene type direction distance location
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 38532 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 78540 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 89869 58210877 ~ 58222945 (-)
LOC103038188 LOC108411316 coding downstream 114614 58192628 ~ 58198200 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 123085 58175809 ~ 58189729 (-)
LOC103034096 foxc1 coding upstream 6668 58392121 ~ 58394358 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 21983 58407436 ~ 58410581 (-)
LOC103033450 foxq1 coding upstream 31928 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 100155 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 113294 58498747 ~ 58502531 (-)
LOC103035795 NA non-coding downstream 48696 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 188249 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 255354 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 318701 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 436069 57876271 ~ 57876745 (-)
G29162 NA non-coding upstream 29711 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 135184 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 283841 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 389062 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 393602 58779055 ~ 58779986 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 138110 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 317338 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 471496 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1617979 56640351 ~ 56694835 (-)
G28536 NA other downstream 2496216 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 547510 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 613088 58998541 ~ 59085886 (-)
G29478 NA other upstream 1052147 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1121473 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1763944 60149397 ~ 60162066 (-)

Expression


Co-expression Network