G29162


Basic Information

Item Value
gene id G29162
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58415164 ~ 58415433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39146
gctggatcttgtttacacaaacatccccagcgcgtaccgggcggagccccgcccccacctcgctttctcggaccacatgtgtgtttggctgactccaacatacacaccactcatcagacgctccagaccagttcagaagcaggtgaaaacctggccggcaggctccatctctgcccttcaggactgttttgagtgcactgcatgggacatgtttagggaggctgctactgaaggcgattctgttgatttggaggagtatgcagcatcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39146 True 270 lncRNA 0.55 1 58415164 58415433

Neighbor

gene id symbol gene type direction distance location
LOC103033774 foxf2,LOC104946676 coding downstream 4583 58407436 ~ 58410581 (-)
LOC103034096 foxc1 coding downstream 20806 58392121 ~ 58394358 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 140882 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 180890 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 192219 58210877 ~ 58222945 (-)
LOC103033450 foxq1 coding upstream 1948 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 70175 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 83314 58498747 ~ 58502531 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 167295 58582728 ~ 58593926 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 519459 58934892 ~ 58942197 (-)
G29131 gmds,LOC107711642 non-coding downstream 29711 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 151046 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 290599 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 357704 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 421051 57992403 ~ 57994113 (-)
G29194 NA non-coding upstream 105204 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 253861 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 359082 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 363622 58779055 ~ 58779986 (-)
G29254 NA non-coding upstream 364771 58780204 ~ 58780550 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 240460 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 419688 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 573846 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1720329 56640351 ~ 56694835 (-)
G28536 NA other downstream 2598566 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 517530 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 583108 58998541 ~ 59085886 (-)
G29478 NA other upstream 1022167 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1091493 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1733964 60149397 ~ 60162066 (-)

Expression


Co-expression Network