G29252


Basic Information

Item Value
gene id G29252
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58779055 ~ 58779986 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39245
GCTCCGGTGTCCCGGTCTGGAGGAGTGTTTGGAGGGGGGAGCGCGAGCGAGCGCAGCCTGGACTCGGACACGCGCGGCCATATTCGGCTTTAGACTCAGCCACACCGGCTAGCACTGGGGCTAACAGCGGAGAGCCGCCGACCGGAGGAGGACCGCCGCCCCCAGAGTCCGCGCACACCCGCACTTGCGTATAGCGCGGGCGGAGGGAGCCGCCGGCGGTGGTGGTGCTTGCGGTCAGGGAGAGGGAGGACACGGCTGGCTGTTCGGGATATATAATAGCTGTGTTTCGGGCCGAGTCTGAGGGAATGGGCGTCCGGTCAACGTGAGACTCGACGGGATTAAAAAACTGGCTTCTGACCGCCGAAAGTGCGGGTTTTCCGTCAGGAACCTCGTCAGTGTGAGCTGGAGCAGATGGGAGCCCCGGGGCCTCGAGTGTGAGACGGGGGTTTAGCGAGGCGGCCGATTAGCTGGAAGCTTCGTTTAGCAACGCTGAGCCCGATGTTGGGCTTGTTTTGCTAGCTGGCTAGCTGAGCAGCTAGCTAGCAAGTTGGAGTCTGGCACTCCAGAGCTCCAGTAAAAGGCCGAACAGACACTCGGGAAACTAGTGGTTTCGCTGCGCCCGGCGGTGCGGGGTGGTCTCTGCCCCCTGTTCCTGTTCACTCCGGCTCGGGGTTGTTTTTTCCAGGCTAGAGGGAGGGAGTGGTGCTGATAGAAAATGTCTGCGAAGGTTCGCCTGAAGAAGTTGGAGCAGTTGCTCCTGGATGGTCACCAGAAGAACGCCAGCTCGCTGAGCGTCGAAACCCTGCTGGATATTCTCATCTGTTTGTACAACGAATGCAGCAGTTCGCCCCTGAAACGGGAGAAACATGTGACGGAGTTTCTGGAATGGGGTGAGTTGCTCTCGGCTGGTCTCTGTGTGATGATGATGGCCA

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39245 True 932 lncRNA 0.60 1 58779055 58779986

Neighbor

gene id symbol gene type direction distance location
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 185129 58582728 ~ 58593926 (-)
LOC103032305 LOC103032305,LOC108444535 coding downstream 276524 58498747 ~ 58502531 (-)
LOC103032621 irf4,LOC108257893 coding downstream 283597 58485608 ~ 58495458 (-)
LOC103033450 foxq1 coding downstream 360209 58417381 ~ 58418846 (-)
LOC103033774 foxf2,LOC104946676 coding downstream 368474 58407436 ~ 58410581 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 154906 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 167667 58947653 ~ 58952885 (-)
ccm2 ccm2 coding upstream 196676 58976662 ~ 58996762 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding upstream 578841 59358827 ~ 59434313 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding upstream 665525 59445511 ~ 59486743 (-)
G29253 NA non-coding downstream 4104 58774515 ~ 58774951 (-)
G29233 NA non-coding downstream 73890 58669294 ~ 58705165 (-)
G29194 NA non-coding downstream 258099 58520637 ~ 58520956 (-)
G29162 NA non-coding downstream 363622 58415164 ~ 58415433 (-)
G29131 gmds,LOC107711642 non-coding downstream 393602 58312814 ~ 58385453 (-)
G29254 NA non-coding upstream 218 58780204 ~ 58780550 (-)
G29255 NA non-coding upstream 703 58780689 ~ 58781074 (-)
G29260 NA non-coding upstream 38648 58818634 ~ 58819853 (-)
G29270 NA non-coding upstream 68701 58848687 ~ 58851351 (-)
G29279 NA non-coding upstream 82865 58862851 ~ 58863495 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 604351 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 783579 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 937737 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 2084220 56640351 ~ 56694835 (-)
G28536 NA other downstream 2962457 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 152977 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 218555 58998541 ~ 59085886 (-)
G29478 NA other upstream 657614 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 726940 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1369411 60149397 ~ 60162066 (-)

Expression


Co-expression Network